RNA id: TCONS_00013836


Basic Information

Item Value
RNA id TCONS_00013836
length 2184
lncRNA type antisense_over
GC content 0.46
exon number 7
gene id XLOC_006679
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 29709345 ~ 29803009 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAATACTGCAGTTTTCTGACACGTCCGTGAGAGggcACCAGATGACCCCAAACTGCCATCGATGCACCCTCAAAAATAGAGCATTATGCCTCTAGCTGTTTCCCCTGTTACCAGCAAAAGacATGGAGCTCTGTTGCTTTCAGGCCCGGGTGCTTTTTCCCCCTCCCTCCTTTCCTCCCATCTCTCCGAAGAGATTTGGAACAAGGGGGATCCCTTCAGCACCTGCTCAGGTTTTCAGCGGGTCGGAGGGGTGCCCATTTACACGGTACCATCCTACTGGCACCAGGAAGACTTCCATTATACGGCTCGGCAGGAACGGCGCTTAAGAATCCGCGCTAGTCATTCATTGTGAAGGATCATCCTGCATGTGATGTATCAGAGATCATTTATAGGACCTTGACCTGCTTCGGCTCAGGAACATTTGATAGCATGTGCCTGGAGTGCGACAGAGAAGGACTTGGATTTCCCTGGGCTGTAGAGATGCTTTGTTTCACTGTaaatgtgtgcgtgtctgtgtgcgCGCATATCTATTATCCTTCTGAGAAATACAGAGGCGCTCGGCTCCCACACTGGCCTCTGATCATCGCCCTGTAAATGCAGCCTGTCACCTTCAGTGGTGTAATGATCACAGAAACAGTGACCTTGATCTATAGCAAGCCATAACAGAGAAGAGAGAGCTTCTCCCACTCTCCGCACTCAGATATAACAGTGAAACACGGCATACAGGGGAAACCAGAGGAGGGTTCAGAACAGGGCCATTTGATTGGCAATAAAGGTTGTTGGAGTGTCTGTAATGGATGTGAGATCTCTCCTGTTATCATCCATTTGGATAGAGCATCGACTGAAGACCACGCCATCACAGATTGAAAACTCAGGGAGTGGCTGATTATGGTTTTATCGCATAGTCCATTACACTGGTCAACACTGCACACTGTTTCTCAGAGCTGAGGCAGTGCTGGATTAATGGGGCAGCTCTTCTGTTCTCTGCAGCCCCCTCGGACATACACACCTTTCCTTCCCTTCAGCAAGGCTTTTTGAATATGTCCCAGTTCCTGCCACGTTTAGCTTTAAATAAGTTTCACCCTCCcttatagtagtagtagaagGGCGCAGTGGGTTCGTGCACCCTATGAGTTCTGCACTCATCATTTATCAtccctctctttttttttccagaaacgATGAACAATATTGTATCATAGACTGCTCTTGTGATGCCCGAGGAACCTTTTGGAAATTATATGTGCACCTCATATTATGTTCCTTTGATGTATTCGGGTCCAGCCTATTGGAGCATGGCAGACCACCTGAGAGTTGTTTTCTGGACTCTGGGAGGTCACCTGACACCACTGCTCTGGAGAAGGTGCACAGCACTGGATTTCACATGAAAGAATCCCCTGCAGCTTTGGAATGacatgggAGGTCTCTCGAGGTCCCCGTCCAGGACAATGATGTATTTAAGTCCCCTAAGAGGTCAGTTGGACTCTGTCCAGCACATCACCTGCAATCAATAGTGTTGGTAAACCAGGCTCAACTGAGTGGCCATGAAGACTCCCCTTATAAACACGCTCACAGAGAGGCCGGCATGGCCCATTGCTTTGCTAAAACCGCAACCAGCAtcctcctgacacacacacataacacatgCCACCACTCTGAAAACAAGTGTTGATGACAAAGAGAAGAAAAATAACAGCAACTCAGCGGTAAGTGGAGAGCCTCCAGGTGATGAAATCCTCTCTAAAATGACACAAAATTGAGGCAAATTGACAGCTTTGTGAATGTGTTTATAAATGCTGGTGGGTGGCGCTGCTGCGGAGTACTATGTGgctgaaataatttatttttattttgttttaatttgcaaAACGGCTTAAATATATCTTGGCAATTTTTCTGTCAGCTTACAGAATCACTTAAGTGACATGCAAGGTTACGGTAATATAACAATAtgctttttttgtaaattttgtgACTTTTCAGGTCTATTTAGTGATAATTGGGAGTCATTTGTTTTAGTATTAAGaatggcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggtttgtgtgtgggtttgtgtgtgggtttgtgtgtgtgtgtttatacacagttgaagtcaga

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0034440 lipid oxidation biological_process
GO:0006635 fatty acid beta-oxidation biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019395 fatty acid oxidation biological_process
GO:0016042 lipid catabolic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013829 lncRNA downstream 4108 29738426 ~ 29744854 (-) False XLOC_006679
TCONS_00013825 lncRNA downstream 4156 29709345 ~ 29744806 (-) False XLOC_006679
TCONS_00013828 lncRNA downstream 4156 29735035 ~ 29744806 (-) False XLOC_006679
TCONS_00013827 lncRNA downstream 4156 29735035 ~ 29744806 (-) False XLOC_006679
TCONS_00013485 lncRNA downstream 9591 29735035 ~ 29739371 (-) False XLOC_006679
TCONS_00013486 lncRNA upstream 134386 29937395 ~ 29942962 (-) True XLOC_006680
TCONS_00012883 lncRNA upstream 150461 29953470 ~ 29965784 (-) True XLOC_006681
TCONS_00013487 lncRNA upstream 181868 29984877 ~ 29985502 (-) True XLOC_006682
TCONS_00012893 lncRNA upstream 355452 30158461 ~ 30161569 (-) True XLOC_006688
TCONS_00013488 lncRNA upstream 442664 30245673 ~ 30250564 (-) True XLOC_006689
TCONS_00012877 mRNA downstream 243016 29480010 ~ 29505946 (-) False XLOC_006677
TCONS_00012878 mRNA downstream 243358 29480656 ~ 29505604 (-) True XLOC_006677
TCONS_00012876 mRNA downstream 293103 29446226 ~ 29455859 (-) True XLOC_006676
TCONS_00012875 mRNA downstream 324508 29422049 ~ 29424454 (-) False XLOC_006675
TCONS_00012874 mRNA downstream 327631 29409359 ~ 29421331 (-) True XLOC_006674
TCONS_00012882 mRNA upstream 149624 29952633 ~ 29980215 (-) False XLOC_006681
TCONS_00012884 mRNA upstream 188081 29991090 ~ 30006260 (-) True XLOC_006683
TCONS_00012885 mRNA upstream 204545 30007554 ~ 30028103 (-) False XLOC_006684
TCONS_00012886 mRNA upstream 206608 30009617 ~ 30027730 (-) True XLOC_006684
TCONS_00012887 mRNA upstream 230027 30033036 ~ 30034754 (-) True XLOC_006685
TCONS_00012879 other downstream 241361 29506660 ~ 29507601 (-) False XLOC_006678
TCONS_00012862 other downstream 1331804 28285862 ~ 28417158 (-) True XLOC_006661
TCONS_00012861 other downstream 1453548 28276898 ~ 28295414 (-) False XLOC_006661
TCONS_00012858 other downstream 1569412 28179434 ~ 28179550 (-) True XLOC_006658
TCONS_00012853 other downstream 2058686 27690160 ~ 27690276 (-) True XLOC_006654
TCONS_00012895 other upstream 829096 30632105 ~ 30632219 (-) True XLOC_006693
TCONS_00012900 other upstream 861810 30664819 ~ 30700459 (-) False XLOC_006695
TCONS_00012906 other upstream 1052310 30855319 ~ 30872439 (-) True XLOC_006699
TCONS_00012916 other upstream 1272824 31075833 ~ 31075947 (-) True XLOC_006705
TCONS_00012917 other upstream 1323440 31126449 ~ 31127046 (-) True XLOC_006708

Expression Profile

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