RNA id: CI01000001_01873684_01874535.mRNA


Basic Information

Item Value
RNA id CI01000001_01873684_01874535.mRNA
length 224
RNA type mRNA
GC content 0.39
exon number 2
gene id CI01000001_01873684_01874535
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 1873640 ~ 1874535 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGAGCAGCGACACGACCGCTCTGACCCAGAAAGAGATGTTTTGCGGTGCAGATTTTAAAATCTTACAGATCAATGAGAAACATGAAAAACAACAGATGCTGATTCGGGCCCTTAAAAAAAAGCCCGCTCTGATTAATTTCGCGGTCACACGAAGTCGGCTTCCTTTGGGAACTGTGTAAGGTAGAAAATTTGCTTTTTTAAAATTTCCTTACATATTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15791 lncRNA downstream 2074 1867635 ~ 1871566 (-) True G14112
TU15782 lncRNA downstream 102172 1767956 ~ 1771468 (-) True G14104
TU15775 lncRNA downstream 118649 1754447 ~ 1754991 (-) True G14100
TU15769 lncRNA downstream 120409 1749106 ~ 1753231 (-) False G14096
TU15770 lncRNA downstream 122911 1750193 ~ 1750729 (-) True G14096
TU15955 lncRNA upstream 19171 1893706 ~ 1896090 (-) True G14257
TU15957 lncRNA upstream 46060 1920595 ~ 1920846 (-) True G14259
TU15959 lncRNA upstream 47364 1921899 ~ 1922240 (-) True G14261
TU15965 lncRNA upstream 100660 1975195 ~ 1975867 (-) True G14267
TU15915 lncRNA upstream 129626 2004161 ~ 2005063 (-) True G14217
CI01000001_01772744_01773670.mRNA mRNA downstream 99970 1772331 ~ 1773670 (-) True CI01000001_01772744_01773670
CI01000001_01760676_01761671.mRNA mRNA downstream 111969 1760166 ~ 1761671 (-) True CI01000001_01760676_01761671
CI01000001_01757774_01758445.mRNA mRNA downstream 114197 1757189 ~ 1759443 (-) True CI01000001_01757774_01758445
CI01000001_01707363_01743870.mRNA mRNA downstream 129770 1707089 ~ 1743870 (-) True CI01000001_01707363_01743870
CI01000001_01637015_01638058.mRNA mRNA downstream 235582 1636695 ~ 1638058 (-) True CI01000001_01637015_01638058
CI01000001_01902970_01917410.mRNA mRNA upstream 27894 1902429 ~ 1917454 (-) True CI01000001_01902970_01917410
CI01000001_01932927_01933914.mRNA mRNA upstream 58086 1932621 ~ 1933914 (-) True CI01000001_01932927_01933914
CI01000001_01976950_01992032.mRNA mRNA upstream 102181 1976716 ~ 1993561 (-) True CI01000001_01976950_01992032
CI01000001_01999489_02002753.mRNA mRNA upstream 123593 1998128 ~ 2002928 (-) True CI01000001_01999489_02002753
CI01000001_02057429_02071506.mRNA mRNA upstream 182279 2056814 ~ 2071506 (-) True CI01000001_02057429_02071506
TU15779 other downstream 106182 1763669 ~ 1767458 (-) False G14104
TU14337 other downstream 1476507 367242 ~ 397133 (-) True G12898
TU14333 other downstream 1616123 257372 ~ 257517 (-) True G12894
TU14263 other downstream 1738715 129502 ~ 134925 (-) True G12848
TU14286 other downstream 1748183 122814 ~ 125457 (-) False CI01000001_00124107_00131285
TU15917 other upstream 119675 1994210 ~ 1994898 (-) True G14219
TU15926 other upstream 181439 2055974 ~ 2056478 (-) True G14228
TU15886 other upstream 384854 2262344 ~ 2297212 (-) True G14188
TU17347 other upstream 2517779 4392314 ~ 4399515 (-) True CI01000001_04395469_04399381
TU17350 other upstream 2601749 4476800 ~ 4478145 (-) True G15528

Expression Profile