RNA id: CI01000001_01932927_01933914.mRNA


Basic Information

Item Value
RNA id CI01000001_01932927_01933914.mRNA
length 807
RNA type mRNA
GC content 0.41
exon number 4
gene id CI01000001_01932927_01933914
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 1932621 ~ 1933914 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGGTGGGTCTCCTGTTGATTGTCGTAGCAGCATGGGGGAAAGGCTTTGGCATTGTCTCCAGCATCCACATCATCGGTGGCGTGATTGCCGTGGGCTTCTTTCTGCTACTGATCTCCATTGTGGGGCTCATTGGCGCCGTCCATCATCACCAATACATGGTCATTCTCTTCATTGTCTTCCTCTTCCAGTTTGGAATTTCCTGTTCTTGCCTGGCCATGAACCAGGGTCAGCAGGAGAAGCTGCTGAACTCGTCCTGGAAAATAATGAGTAACGACACGAGAATCAGCCTTGAGAACAAAATGGACTGCTGTGGCCTGTTCAACAATACTCAGACAGATTTTGTATCTGACTTACACCTCTGTGAAGCTCCATGTGTAAAAAAGAAATCCTGCCTCACCTGTGGTGAAAAGATGCTCCAACATTCATCAGAAGCTCTGAAGATTCTGGGAGGAGTCGGCCTCTTTTTCAGCTTTACAGAGGTTAGTTCAGATCACATGTGAATGCCTCAAAAACATTGTGGGAACTGGAGATCTGGACTTCTTTTGTTGCCTGTCCTTCTGAGGTCTGGGCATGTTAGTTAGAGAATCATGGTTAAAATAATTGTTATTGATCATAAATAAGTTGTAATTAAGAATGTGGCATCCTACAAAAACTAAATTTACAAACTACATCATTGTTAGAAGGTAAAATACATTAAAAAGTATCAATTACACATCTAAAGCTCATCCTTTACTCTTCATTTTGTTGCATAAGCTCAATAAGAAAAGTTGTTGTGGTTGTTAGTAAGTGAAAAAGAGATAAATAAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17356 TSPAN13_31; tetraspanin-13/31

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15959 lncRNA downstream 10381 1921899 ~ 1922240 (-) True G14261
TU15957 lncRNA downstream 11775 1920595 ~ 1920846 (-) True G14259
TU15955 lncRNA downstream 36531 1893706 ~ 1896090 (-) True G14257
TU15791 lncRNA downstream 61055 1867635 ~ 1871566 (-) True G14112
TU15782 lncRNA downstream 161153 1767956 ~ 1771468 (-) True G14104
TU15965 lncRNA upstream 41281 1975195 ~ 1975867 (-) True G14267
TU15915 lncRNA upstream 70247 2004161 ~ 2005063 (-) True G14217
TU15911 lncRNA upstream 71381 2005295 ~ 2007049 (-) True G14213
TU15914 lncRNA upstream 168242 2102156 ~ 2102501 (-) True G14216
TU15896 lncRNA upstream 168675 2102589 ~ 2103469 (-) True G14198
CI01000001_01902970_01917410.mRNA mRNA downstream 15167 1902429 ~ 1917454 (-) True CI01000001_01902970_01917410
CI01000001_01873684_01874535.mRNA mRNA downstream 58086 1873640 ~ 1874535 (-) True CI01000001_01873684_01874535
CI01000001_01772744_01773670.mRNA mRNA downstream 158951 1772331 ~ 1773670 (-) True CI01000001_01772744_01773670
CI01000001_01760676_01761671.mRNA mRNA downstream 170950 1760166 ~ 1761671 (-) True CI01000001_01760676_01761671
CI01000001_01757774_01758445.mRNA mRNA downstream 173178 1757189 ~ 1759443 (-) True CI01000001_01757774_01758445
CI01000001_01976950_01992032.mRNA mRNA upstream 42802 1976716 ~ 1993561 (-) True CI01000001_01976950_01992032
CI01000001_01999489_02002753.mRNA mRNA upstream 64214 1998128 ~ 2002928 (-) True CI01000001_01999489_02002753
CI01000001_02057429_02071506.mRNA mRNA upstream 122900 2056814 ~ 2071506 (-) True CI01000001_02057429_02071506
CI01000001_02126257_02127537.mRNA mRNA upstream 191151 2125065 ~ 2127567 (-) True CI01000001_02126257_02127537
CI01000001_02141590_02142836.mRNA mRNA upstream 207646 2141560 ~ 2142986 (-) True CI01000001_02141590_02142836
TU15779 other downstream 165163 1763669 ~ 1767458 (-) False G14104
TU14337 other downstream 1535488 367242 ~ 397133 (-) True G12898
TU14333 other downstream 1675104 257372 ~ 257517 (-) True G12894
TU14263 other downstream 1797696 129502 ~ 134925 (-) True G12848
TU14286 other downstream 1807164 122814 ~ 125457 (-) False CI01000001_00124107_00131285
TU15917 other upstream 60296 1994210 ~ 1994898 (-) True G14219
TU15926 other upstream 122060 2055974 ~ 2056478 (-) True G14228
TU15886 other upstream 325475 2262344 ~ 2297212 (-) True G14188
TU17347 other upstream 2458400 4392314 ~ 4399515 (-) True CI01000001_04395469_04399381
TU17350 other upstream 2542370 4476800 ~ 4478145 (-) True G15528

Expression Profile