RNA id: TCONS_00012883


Basic Information

Item Value
RNA id TCONS_00012883
length 520
lncRNA type retained_intron
GC content 0.45
exon number 4
gene id XLOC_006681
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 29952633 ~ 29980215 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCAGGTTGATTTTGAAAATCCTGACTATGACAAGTTTCCTAATTTCAAAAATGCTGTTGGGTATGAGGCTGTCGTGGGACCCGGAGATGTGCTGTACATCCCCATGTATTGGTGGCATCACATTGAGTCCCTTTTAAATGGAGGAGAGACCATCACAGTCAACTTCTGGTACAAGGTATGCTTTATCTCACTCATGCACTTTGGTGTCTGTATACATGATACATCTGTGCACAAATCAACCATTGTTGCTCCAAACATTTCCAGGGGGCTCCCACTCCAAAGAGGATAGAGTATCCTCTGAAAGCCCATCAGAAGGTGGCCATAATGAGGAATATAGAGAAGATGTTGGGAGAGGCCTTGGGGGACCCACATGAGGTCGGTCCGTTGCTGAACATGATGATCAAGGGCAGATATGATCATGGACTGAGTTAATAGCCTGTACTGAAGCTTCTTTAGTGTGCTGCTACAACAgtctgtttatgtgtgtatgagagagagaatgtgaatgGGAGTATGTGCT

Function

GO:

id name namespace
GO:0030947 regulation of vascular endothelial growth factor receptor signaling pathway biological_process
GO:0045746 negative regulation of Notch signaling pathway biological_process
GO:0061428 negative regulation of transcription from RNA polymerase II promoter in response to hypoxia biological_process
GO:1901343 negative regulation of vasculature development biological_process
GO:0036138 peptidyl-histidine hydroxylation biological_process
GO:0042264 peptidyl-aspartic acid hydroxylation biological_process
GO:0042265 peptidyl-asparagine hydroxylation biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0071532 ankyrin repeat binding molecular_function
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0008198 ferrous iron binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0051213 dioxygenase activity molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0036139 peptidyl-histidine dioxygenase activity molecular_function
GO:0036140 peptidyl-asparagine 3-dioxygenase activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0031406 carboxylic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030826-19 Predicted to enable several functions, including 2-oxoglutarate-dependent dioxygenase activity; ankyrin repeat binding activity; and transition metal ion binding activity. Acts upstream of or within negative regulation of vasculature development and regulation of vascular endothelial growth factor receptor signaling pathway. Predicted to be located in perinuclear region of cytoplasm. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including alar plate midbrain region; central nervous system; immature eye; midbrain hindbrain boundary neural rod; and midbrain neural keel. Orthologous to human HIF1AN (hypoxia inducible factor 1 subunit alpha inhibitor).

Ensembl:

ensembl_id ENSDART00000142211

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013486 lncRNA downstream 10508 29937395 ~ 29942962 (-) True XLOC_006680
TCONS_00013834 lncRNA downstream 150461 29746577 ~ 29803009 (-) False XLOC_006679
TCONS_00013487 lncRNA upstream 19093 29984877 ~ 29985502 (-) True XLOC_006682
TCONS_00012893 lncRNA upstream 192677 30158461 ~ 30161569 (-) True XLOC_006688
TCONS_00013488 lncRNA upstream 279889 30245673 ~ 30250564 (-) True XLOC_006689
TCONS_00013838 lncRNA upstream 583625 30549409 ~ 30551509 (-) True XLOC_006690
TCONS_00013839 lncRNA upstream 602783 30568567 ~ 30571143 (-) True XLOC_006691
TCONS_00012877 mRNA downstream 447524 29480010 ~ 29505946 (-) False XLOC_006677
TCONS_00012878 mRNA downstream 447866 29480656 ~ 29505604 (-) True XLOC_006677
TCONS_00012876 mRNA downstream 497611 29446226 ~ 29455859 (-) True XLOC_006676
TCONS_00012875 mRNA downstream 529016 29422049 ~ 29424454 (-) False XLOC_006675
TCONS_00012874 mRNA downstream 532139 29409359 ~ 29421331 (-) True XLOC_006674
TCONS_00012884 mRNA upstream 25306 29991090 ~ 30006260 (-) True XLOC_006683
TCONS_00012885 mRNA upstream 41770 30007554 ~ 30028103 (-) False XLOC_006684
TCONS_00012886 mRNA upstream 43833 30009617 ~ 30027730 (-) True XLOC_006684
TCONS_00012887 mRNA upstream 67252 30033036 ~ 30034754 (-) True XLOC_006685
TCONS_00012888 mRNA upstream 169891 30135675 ~ 30143127 (-) False XLOC_006686
TCONS_00012879 other downstream 445869 29506660 ~ 29507601 (-) False XLOC_006678
TCONS_00012862 other downstream 1536312 28285862 ~ 28417158 (-) True XLOC_006661
TCONS_00012861 other downstream 1658056 28276898 ~ 28295414 (-) False XLOC_006661
TCONS_00012858 other downstream 1773920 28179434 ~ 28179550 (-) True XLOC_006658
TCONS_00012853 other downstream 2263194 27690160 ~ 27690276 (-) True XLOC_006654
TCONS_00012895 other upstream 666321 30632105 ~ 30632219 (-) True XLOC_006693
TCONS_00012900 other upstream 699035 30664819 ~ 30700459 (-) False XLOC_006695
TCONS_00012906 other upstream 889535 30855319 ~ 30872439 (-) True XLOC_006699
TCONS_00012916 other upstream 1110049 31075833 ~ 31075947 (-) True XLOC_006705
TCONS_00012917 other upstream 1160665 31126449 ~ 31127046 (-) True XLOC_006708

Expression Profile

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