Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00012885 |
| length | 4671 |
| RNA type | mRNA |
| GC content | 0.37 |
| exon number | 5 |
| gene id | XLOC_006684 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007124.7 |
| NCBI id | CM002897.2 |
| chromosome length | 52186027 |
| location | 30007554 ~ 30028103 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006629 | lipid metabolic process | biological_process |
| GO:0006631 | fatty acid metabolic process | biological_process |
| GO:0006633 | fatty acid biosynthetic process | biological_process |
| GO:0006636 | unsaturated fatty acid biosynthetic process | biological_process |
| GO:1903966 | monounsaturated fatty acid biosynthetic process | biological_process |
| GO:0070542 | response to fatty acid | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0005789 | endoplasmic reticulum membrane | cellular_component |
| GO:0030176 | integral component of endoplasmic reticulum membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0004768 | stearoyl-CoA 9-desaturase activity | molecular_function |
| GO:0016717 | oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | molecular_function |
| GO:0005506 | iron ion binding | molecular_function |
| GO:0032896 | palmitoyl-CoA 9-desaturase activity | molecular_function |
| GO:0016491 | oxidoreductase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-050522-12 | Predicted to enable iron ion binding activity; palmitoyl-CoA 9-desaturase activity; and stearoyl-CoA 9-desaturase activity. Predicted to be involved in monounsaturated fatty acid biosynthetic process; response to fatty acid; and unsaturated fatty acid biosynthetic process. Predicted to act upstream of or within fatty acid biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Predicted to be integral component of endoplasmic reticulum membrane. Is expressed in brain and muscle. Orthologous to human SCD (stearoyl-CoA desaturase). |
| ensembl_id | ENSDART00000183889 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00013487 | lncRNA | downstream | 22052 | 29984877 ~ 29985502 (-) | True | XLOC_006682 |
| TCONS_00012883 | lncRNA | downstream | 41770 | 29953470 ~ 29965784 (-) | True | XLOC_006681 |
| TCONS_00013486 | lncRNA | downstream | 64592 | 29937395 ~ 29942962 (-) | True | XLOC_006680 |
| TCONS_00013837 | lncRNA | downstream | 204545 | 29754281 ~ 29803009 (-) | True | XLOC_006679 |
| TCONS_00012881 | lncRNA | downstream | 243963 | 29749474 ~ 29763591 (-) | False | XLOC_006679 |
| TCONS_00012893 | lncRNA | upstream | 130358 | 30158461 ~ 30161569 (-) | True | XLOC_006688 |
| TCONS_00013488 | lncRNA | upstream | 217570 | 30245673 ~ 30250564 (-) | True | XLOC_006689 |
| TCONS_00013838 | lncRNA | upstream | 521306 | 30549409 ~ 30551509 (-) | True | XLOC_006690 |
| TCONS_00013839 | lncRNA | upstream | 540464 | 30568567 ~ 30571143 (-) | True | XLOC_006691 |
| TCONS_00012896 | lncRNA | upstream | 611442 | 30639545 ~ 30645909 (-) | True | XLOC_006692 |
| TCONS_00012884 | mRNA | downstream | 1294 | 29991090 ~ 30006260 (-) | True | XLOC_006683 |
| TCONS_00012882 | mRNA | downstream | 27339 | 29952633 ~ 29980215 (-) | False | XLOC_006681 |
| TCONS_00012877 | mRNA | downstream | 501608 | 29480010 ~ 29505946 (-) | False | XLOC_006677 |
| TCONS_00012878 | mRNA | downstream | 501950 | 29480656 ~ 29505604 (-) | True | XLOC_006677 |
| TCONS_00012876 | mRNA | downstream | 551695 | 29446226 ~ 29455859 (-) | True | XLOC_006676 |
| TCONS_00012887 | mRNA | upstream | 4933 | 30033036 ~ 30034754 (-) | True | XLOC_006685 |
| TCONS_00012888 | mRNA | upstream | 107572 | 30135675 ~ 30143127 (-) | False | XLOC_006686 |
| TCONS_00012889 | mRNA | upstream | 107743 | 30135846 ~ 30142087 (-) | True | XLOC_006686 |
| TCONS_00012890 | mRNA | upstream | 116834 | 30144937 ~ 30149973 (-) | False | XLOC_006687 |
| TCONS_00012891 | mRNA | upstream | 117599 | 30145702 ~ 30150592 (-) | True | XLOC_006687 |
| TCONS_00012879 | other | downstream | 499953 | 29506660 ~ 29507601 (-) | False | XLOC_006678 |
| TCONS_00012862 | other | downstream | 1590396 | 28285862 ~ 28417158 (-) | True | XLOC_006661 |
| TCONS_00012861 | other | downstream | 1712140 | 28276898 ~ 28295414 (-) | False | XLOC_006661 |
| TCONS_00012858 | other | downstream | 1828004 | 28179434 ~ 28179550 (-) | True | XLOC_006658 |
| TCONS_00012853 | other | downstream | 2317278 | 27690160 ~ 27690276 (-) | True | XLOC_006654 |
| TCONS_00012895 | other | upstream | 604002 | 30632105 ~ 30632219 (-) | True | XLOC_006693 |
| TCONS_00012900 | other | upstream | 636716 | 30664819 ~ 30700459 (-) | False | XLOC_006695 |
| TCONS_00012906 | other | upstream | 827216 | 30855319 ~ 30872439 (-) | True | XLOC_006699 |
| TCONS_00012916 | other | upstream | 1047730 | 31075833 ~ 31075947 (-) | True | XLOC_006705 |
| TCONS_00012917 | other | upstream | 1098346 | 31126449 ~ 31127046 (-) | True | XLOC_006708 |
