RNA id: CI01000001_04422037_04431229.mRNA



Basic Information


Item Value
RNA id CI01000001_04422037_04431229.mRNA
length 1826
RNA type mRNA
GC content 0.45
exon number 7
gene id CI01000001_04422037_04431229
representative False

Chromosome Information


Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 4422037 ~ 4432602 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTGACACAGTGAAGCCGAGGGCATGGATGCTGTCATTGGAGTGTCAAGTGGTCATGGGACCTCACCTTGACTTCACAACTCGTCTGGCTGCCATTTTTGCCAGCTACTACAATTTCAATTTCAAGTATGCTGAAGATGCTTCTTGCACTCTGGAATTTATCCAAAGGTGGTGCGAGTCTGTCGGCTGGTGTAACTTACTCAAGAATCCCAGAGCGGATGATGTTCTTCAAGGATGGGAGATTGTATGTAATGGAGGTGATGGCTGGGCGGTCGAAGGAAATAGGAAACCATTTCCGGACAACACAGTCACCAAATGTTTCGTAACATCTTATGGGTTATGTTTGAAGCGACAGCTGATTGATTTGAAGAAAGAAGGTTATAGTGCTGCTTTAATGGATCAAGTGCAACCTCATATCAAAATATCAGACTGGTATGCCCCATGCCCTGACTGTGGAAGTGAGTATCAGATCTGTGTAGAGTTGCTTGATCAGAGGAAAAACCCCATCAGAACCTTTCAGCCTGAGACAGTTATATTTCCATCTGGGAACAGTGAGCCGTGGTGTCAAATGACCCACATCTTTAAGGATTATGGACCTGGAGTTCAGTTTATTCGTTTCACTCATGGTGGGAAGGATACACGGTTCTGGGCAGGCCATTTTGGAATACGGATCACTAGCAGTAGTGTGGAGATCAATCCAACTGATGAGGGACCGCCAGAGGCAGTGCTGAAAGGACTAGTGGAAGACAATTACCTACGCAATCATAAGGAATGTCCGGGCAGGCAGAAAGCACTGCAGCGCATACCACTGGCAAGGGAGTCACATTCCATCTGTAGAAACTTGAAAACGTGCAGGCTGAACCCCAAGTTGCTGCAGCAACTTTTTCGTTTTTCATGTCCAAAAACTGTAGTTTTCTATATGTAAAAACTGCAGTAATCTTTTGTAAGGGATATGCTGTTTTTTTTCAACAGGGAATGTGCATGTGGAACACCCAAGTTCCGAAAGATGCTGCAAAAAATCTAAAATGCATCCCACTGAGCAGTATAATGGATCAACATCACGGCTAGAACACCAGTCAGAGAAAACCTTCCATTTATAAGCATGTAACTTTTCCATGGATGCCGCAAGTGCATTCAAAACAGTGTCCCTGGCCCTCTCTGAACACTCCAATGGTGCTTTTCCACTGCATGGTACGGTCTGGTACAGCTCAGTACGGCTCACTTTTTGGTGCTTTTCCTCTGCATGGTACGGCTCGCTTAAGTAGTACAAAGCGCCAAGAGAGGCCTGGTGGGTCCAATGGCCACACCCACAGTTTCAATCGATCTGGATGTGGGTACTAAACTCTTCCTTCTAGCTGACTCAGTAGGTCTGGTCTGTTGGGTAGAGGACAAGGTGGTCCTATTATCAATGAAAACAGAGTCTGAAACATGACCTCGCAGGCCAATGTGGAGCCACTAACAGCAGACTGTGGCCGCAGTCGTGCACTCGAGACGGAGTCCTCCAAATCAGTGTTAACAGGGGAAAGCATATAGTGTCATGTCTGGCCAGTTGTGTGCAAATGCATCCAGACCCAGGGATCCCGGTTTATCCATCAGGGAAAACCAACGAGGGCAGTGAGATTGTTTGTGAGCACCTCTACAGTTGATGCACTTAAGAAAAATAGACATGCAGCACAACATGGTGGTAATTAACAGAAAAAAAGATGAGAATGTGCATCCATCATGTAAACAATACAAACTTTTGCCTATATGTGAACAATCTGCCCATACAGGCTATTTTGAATCTGCTTAAAAAGGCTATATACTGACACTTATAGGTCTCCATGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU17160 lncRNA upstream 65421 4356216 ~ 4356616 (+) True G15360
TU17137 lncRNA upstream 73456 4343888 ~ 4348581 (+) True G15338
TU17084 lncRNA upstream 148052 4240551 ~ 4273985 (+) True G15288
TU17083 lncRNA upstream 288513 4100122 ~ 4133524 (+) True G15287
TU17170 lncRNA downstream 49706 4481838 ~ 4486799 (+) True G15370
TU17172 lncRNA downstream 54788 4486920 ~ 4491381 (+) False G15371
TU17173 lncRNA downstream 54788 4486920 ~ 4491381 (+) False G15371
TU17174 lncRNA downstream 54788 4486920 ~ 4491381 (+) True G15371
TU17225 lncRNA downstream 134138 4566270 ~ 4566542 (+) True G15404
CI01000001_04369131_04373697.mRNA mRNA upstream 48065 4369131 ~ 4373972 (+) True CI01000001_04369131_04373697
CI01000001_04328211_04330988.mRNA mRNA upstream 90985 4327576 ~ 4331052 (+) True CI01000001_04328211_04330988
CI01000001_04311013_04315588.mRNA mRNA upstream 106272 4311013 ~ 4315765 (+) True CI01000001_04311013_04315588
CI01000001_04296723_04300348.mRNA mRNA upstream 121062 4296601 ~ 4300975 (+) True CI01000001_04296723_04300348
CI01000001_04085864_04225894.mRNA mRNA upstream 196143 4085864 ~ 4225894 (+) True CI01000001_04085864_04225894
CI01000001_04433559_04437385.mRNA mRNA downstream 1427 4433559 ~ 4437450 (+) True CI01000001_04433559_04437385
CI01000001_04462781_04463560.mRNA mRNA downstream 30649 4462781 ~ 4464613 (+) True CI01000001_04462781_04463560
CI01000001_04543164_04553053.mRNA mRNA downstream 110486 4542618 ~ 4553673 (+) True CI01000001_04543164_04553053
CI01000001_04567822_04568927.mRNA mRNA downstream 135332 4567464 ~ 4569260 (+) True CI01000001_04567822_04568927
CI01000001_04586080_04595939.mRNA mRNA downstream 153764 4585896 ~ 4596418 (+) True CI01000001_04586080_04595939
TU16602 other upstream 800586 3616248 ~ 3616411 (+) True G14846
TU15116 other upstream 2751033 1668020 ~ 1671004 (+) True CI01000001_01668334_01670035
TU14532 other upstream 3376885 1043713 ~ 1045152 (+) True G13051
TU14049 other upstream 3929980 490574 ~ 492057 (+) True G12653
TU14066 other upstream 3937627 478386 ~ 478781 (+) True G12670
TU17650 other downstream 629086 5061218 ~ 5064704 (+) False G15794
TU17651 other downstream 629086 5061218 ~ 5063929 (+) True G15794
TU17699 other downstream 854617 5289881 ~ 5289956 (+) True G15838
TU17891 other downstream 1279753 5711885 ~ 5714951 (+) True G15995
TU19033 other downstream 3100440 7532572 ~ 7540586 (+) False CI01000001_07531945_07539781

Expression Profile