RNA id: TCONS_00012889


Basic Information

Item Value
RNA id TCONS_00012889
length 1972
RNA type mRNA
GC content 0.43
exon number 4
gene id XLOC_006686
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 30135675 ~ 30143127 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAGCGCTGCAGATGGAGAACTCGCGCACGCTTTTAAATCAGCGATAAGTTCATATAACGTTAATAAATTTTACTGCTGCTAAGAATTAAAGGAAGAATACGATATTTTTTGCAACTCTAAGTAGTTAATACCGACAAACTCTATACGttagcatgtttttatttatttgagattTGTGTATTGAACTAAATTGTTTATTGTGGCAGTTTATCCGGTTAATTGAAAATGAATACAGCAGAAGAAGCATGTTGTGTTGTCACAGTCTCCGAACAGCTCTTCACACCAGGATCTGAAAATAAAGCTACGAGCTGCAGTGGAGTTTTTCTACATTTCCAGTCAGGGATTGTTGTCTGTAGTGGCATTGTGTTTTCACGCTTTATAAACGACACACTGCCCATAAAGAAAGACACAAAGATATTGTACTCCGAAAGTTTCAAGAAGAAAACAAAAGTGTTTGTAGATTACACTCACTTTTGCGCAAACCCGACGGACAGACGCAAAACGAGCCGTCGAGAAGCTCATCTGGTAATGTTGATCAACTGCCTGGAGTTTCAAGATGCTTTTCACAAAATCTTCAAGGGGCCAGAAAACTGGGACTTTTACAGTGGTGGTTTGGATACAGAAGTACTAGAAGACTCGAGGTTTTTAACTTGGTTTGCACTTTTAAAGGTGCCAACTTCTCCCAATTGCCCCTGTAAAGAGACAATTCCATGGATGAAGAGTGGCAGTCTCAAAAAAGGATGCCATGTCATCGCATGCGGCTCTCCGTTTGGTGGTCTCTGTCCTGACCTCTTCATGAACACGATTAGCAAAGGTATAGTAAGTAATCTGGCAGGAGATGAGAATGCATTGATCTTGACTGATGCCCGCTGCTTGCCTGGCACTGAAGGAGGCGGTGTGTTTATTAGTAAAGGTGGCACCTCTTACCTTGTGGGTTTGATCGCTTCACCGTTGTGCTGGAAGTCTGAGGAGTGGATTGGACTGACTCTTGTGTGTTCTGTTCATCTTATTCTGAAAAACATGCTTCAGACTGAAGGCTCAATCAAGGAGACACTGACTGGTGTTTCCTCACAGTTGGTCAATGGCTCTCTTCAAGCTCCATTAACTGCAAACCGAGGGTCAGGGCTGGAGCTTTACCCTGGAGTTGTGCTTGTCGAGACTGGTTGGCTGTGGGGTTCTGGCGTGCTGCTAAACCAAAATCTGGTTCTGACATGCAGGCACGTGGTGGATGAGAAGTCTGAGCTTACAGTCAAAGTTAACAGTGGAGGAAGATTTCACACAGTACGTGGTAAGGTGCTGTATTCATCAGTGGTATCATCTCCTTATGATATTGCTATAGTGGAGCTTCAGGAGGCACTCACAGATAAAAGAACACCACGGTTTACCAAACACTTTCACACAGGTGAGGATGTGGTTGTTGTGGGTTATGGAGCTTTAGGGAGCCGCTGCGGCCCATCACTGACCTCAGGTATCTTATCCAGAGTCATTACCCATCAGTCTCAGCCTGTGATGCTGCAGACCACATGTGCAGTGCAGTCAGGAGCCAGCGGAGGTGCTGTGATTCGTTCTGACACCGGGGAATTACTAGGTATTGTGTCCAGCAACACTCGAGACTATGCAGCAAAAGTGACGTATCCACACCTGAACTTCAGCATCCCGGTGACTCTTCTGGAGCCTCTGCTCAGACGCTTTGCTCAAACTGGAGACGCTGCTGTGTTTAATGTCTTAGACAGTGCAGTGGAGGATGTGAGGAAGGTATGGAGACTACAAAATATTCAGAGCAAGCTTTAATCAGTCCCCAAAATatactactaataaaataaatatgcagatGGTATAAACTGTGATGCTTAAGAtagaaaaaatgaattaaaaagcgATAGAATTATATTTAAACAAAGTTATGTGTATAAGTTTGATTAAAGCTCACAGAAAATCAGACTTCAATTCCTTTTGCTGCCTAAACTGAGC

Function

GO:

id name namespace
GO:0016485 protein processing biological_process
GO:0006508 proteolysis biological_process
GO:0031998 regulation of fatty acid beta-oxidation biological_process
GO:0005777 peroxisome cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-030131-8525 Predicted to enable serine-type endopeptidase activity. Predicted to be involved in protein processing and regulation of fatty acid beta-oxidation. Predicted to act upstream of or within proteolysis. Predicted to be active in peroxisome. Orthologous to human TYSND1 (trypsin like peroxisomal matrix peptidase 1).

Ensembl:

ensembl_id ENSDART00000110157

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013487 lncRNA downstream 150344 29984877 ~ 29985502 (-) True XLOC_006682
TCONS_00012883 lncRNA downstream 170062 29953470 ~ 29965784 (-) True XLOC_006681
TCONS_00013486 lncRNA downstream 192884 29937395 ~ 29942962 (-) True XLOC_006680
TCONS_00013837 lncRNA downstream 332837 29754281 ~ 29803009 (-) True XLOC_006679
TCONS_00012881 lncRNA downstream 372255 29749474 ~ 29763591 (-) False XLOC_006679
TCONS_00012893 lncRNA upstream 16374 30158461 ~ 30161569 (-) True XLOC_006688
TCONS_00013488 lncRNA upstream 103586 30245673 ~ 30250564 (-) True XLOC_006689
TCONS_00013838 lncRNA upstream 407322 30549409 ~ 30551509 (-) True XLOC_006690
TCONS_00013839 lncRNA upstream 426480 30568567 ~ 30571143 (-) True XLOC_006691
TCONS_00012896 lncRNA upstream 497458 30639545 ~ 30645909 (-) True XLOC_006692
TCONS_00012887 mRNA downstream 101092 30033036 ~ 30034754 (-) True XLOC_006685
TCONS_00012885 mRNA downstream 107743 30007554 ~ 30028103 (-) False XLOC_006684
TCONS_00012886 mRNA downstream 108116 30009617 ~ 30027730 (-) True XLOC_006684
TCONS_00012884 mRNA downstream 129586 29991090 ~ 30006260 (-) True XLOC_006683
TCONS_00012882 mRNA downstream 155631 29952633 ~ 29980215 (-) False XLOC_006681
TCONS_00012890 mRNA upstream 2850 30144937 ~ 30149973 (-) False XLOC_006687
TCONS_00012891 mRNA upstream 3615 30145702 ~ 30150592 (-) True XLOC_006687
TCONS_00012892 mRNA upstream 10130 30152217 ~ 30161684 (-) False XLOC_006688
TCONS_00012894 mRNA upstream 437173 30579260 ~ 30645965 (-) False XLOC_006692
TCONS_00012897 mRNA upstream 513085 30655172 ~ 30662403 (-) False XLOC_006694
TCONS_00012879 other downstream 628245 29506660 ~ 29507601 (-) False XLOC_006678
TCONS_00012862 other downstream 1718688 28285862 ~ 28417158 (-) True XLOC_006661
TCONS_00012861 other downstream 1840432 28276898 ~ 28295414 (-) False XLOC_006661
TCONS_00012858 other downstream 1956296 28179434 ~ 28179550 (-) True XLOC_006658
TCONS_00012853 other downstream 2445570 27690160 ~ 27690276 (-) True XLOC_006654
TCONS_00012895 other upstream 490018 30632105 ~ 30632219 (-) True XLOC_006693
TCONS_00012900 other upstream 522732 30664819 ~ 30700459 (-) False XLOC_006695
TCONS_00012906 other upstream 713232 30855319 ~ 30872439 (-) True XLOC_006699
TCONS_00012916 other upstream 933746 31075833 ~ 31075947 (-) True XLOC_006705
TCONS_00012917 other upstream 984362 31126449 ~ 31127046 (-) True XLOC_006708

Expression Profile

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