RNA id: TCONS_00012890


Basic Information

Item Value
RNA id TCONS_00012890
length 1658
RNA type mRNA
GC content 0.36
exon number 7
gene id XLOC_006687
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 30144937 ~ 30150592 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTGGTTAATTTTCGAGGATTCGTGTTTCTTCTCTCTGTCCTAAAgacaaaacatgaacattttggTCGTTTTGTAACGCAGTGTTTTGCCTGCTTACGATAGATTTAGGGAGCTAGCTGCAAAAATGTCCTTCATATTTGATTGGCTGTACAGAGGGTTCAGCAATGTGTTACAATTATTAGGACTCTATAAAAAGTCTGGGAAATTAGTTTTTCTTGGATTAGACAATGCAGGAAAGACGACATTACTGCACATGCTCAAAGATGATCGACTTGGGCAGCATGTTCCAACACTTCACCCCACATCTGAAGAACTGAGTATTGCTGGGATGACTTTCACTACATTCGACCTGGGTGGTCATGCTCAAGCAAGAAGGGTTTGGAGAAATTACCTTCCGGCAATAAATGGCATAGTGTATCTCGTTGACTGTGCTGACCACGAACGCCTACAAGAAGCCAAAATTGAGTTGGATGCCCTCTTAACCGATGAAACAATCTCCAATGTGCCAATTCTTATTTTGGGGAATAAAATTGACCGTCCTGAAGCGATTAGCGAGGACGCATTAAGAGGAATGTTTGGTCTTTATGGACACACCACTGGAAAGGGGAATGTATCACTGAAAGAACTCAACCTAAGGCCGATGGAAGTCTTTATGTGCAGTGTGTTGAAAAGACAAGGATATGGTGAAGGATTTAGATGGCTTTCTCAGTATATTGATTagaatatttaattgtttattcatttaaaaccCATGCATccttatttattaaatgattatttagCTTGTAATGAAACTATAAGAAGAAGGGGTGGTATATATATAATCTGAATCTATAAAATCCAGTTTAGTGACAGGTAAGCAttagcttaaaaaaaaactaaagtaataCTTAGATAAGGTAATTGTTGCTGTTCTTTTTCTAAAAGCAGGGTAAGAAATATACTAGGCTCTAACTGTTGACAAGGTGGggttatttaaagacattgcatcCTGTTACAAAACACCTTTTTTACACCAGTGTTAGTTTATACCCTGCCCAATGTTAAACGAACCTTTGTATATTGAAATCAAGAACATTAAATCAGGTGAATATCACTTGTGCTGTAAAATTCTGACAGAATCAgtgttattgtttttatacattacATTACCTCAGTGCCTTAATGCTGGTGATTTTTGTTTTCCTATAGTTCTGTATTTCCCATAATTTCAACTGAATTGCCAATGTATGCATATATGCTTGCTTATCAAACTTGCCTTGAGATATACAGTAACACACCTTATGTTTAAAAGgacaaatgtctgatttgtaTGTAACATTTTGATACTTTTAAGATCGGGGCGGATGTAGCATGTTTCAGTGCTGTGTCTACACTGTCCTTTTTCAACACTAAACTACCTGCAGTGAGTACTTTTTGATTGTCAGCTGTGATGTATTTGCAGCTGTGGCATGAGAGTACGTAGGCTATGTGTGCAATAGAAAAATGTGTCGTATTACTAAGTCAATTTTACTCCTACTTGTAAATAGGCTTATATGAATGGTTTGGGATTTTCAGTGCTGCTTATGTTTTGAAATGGCTAATTCTGTACATTCTATTGGGAGCACTTTGTAGAGTTTATGCTCTTAGGTTcgcaatattaaaaacaaatattttg

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0003400 regulation of COPII vesicle coating biological_process
GO:0070863 positive regulation of protein exit from endoplasmic reticulum biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0061024 membrane organization biological_process
GO:0016050 vesicle organization biological_process
GO:0030127 COPII vesicle coat cellular_component
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0070971 endoplasmic reticulum exit site cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-437 Predicted to enable GTPase activity. Predicted to be involved in several processes, including endoplasmic reticulum to Golgi vesicle-mediated transport; intracellular protein transport; and regulation of intracellular transport. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in Golgi apparatus and endoplasmic reticulum. Predicted to be part of COPII vesicle coat. Predicted to be active in endoplasmic reticulum exit site. Orthologous to human SAR1A (secretion associated Ras related GTPase 1A).

Ensembl:

ensembl_id ENSDART00000041515

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013487 lncRNA downstream 159435 29984877 ~ 29985502 (-) True XLOC_006682
TCONS_00012883 lncRNA downstream 179153 29953470 ~ 29965784 (-) True XLOC_006681
TCONS_00013486 lncRNA downstream 201975 29937395 ~ 29942962 (-) True XLOC_006680
TCONS_00013837 lncRNA downstream 341928 29754281 ~ 29803009 (-) True XLOC_006679
TCONS_00012881 lncRNA downstream 381346 29749474 ~ 29763591 (-) False XLOC_006679
TCONS_00012893 lncRNA upstream 8488 30158461 ~ 30161569 (-) True XLOC_006688
TCONS_00013488 lncRNA upstream 95700 30245673 ~ 30250564 (-) True XLOC_006689
TCONS_00013838 lncRNA upstream 399436 30549409 ~ 30551509 (-) True XLOC_006690
TCONS_00013839 lncRNA upstream 418594 30568567 ~ 30571143 (-) True XLOC_006691
TCONS_00012896 lncRNA upstream 489572 30639545 ~ 30645909 (-) True XLOC_006692
TCONS_00012888 mRNA downstream 1810 30135675 ~ 30143127 (-) False XLOC_006686
TCONS_00012889 mRNA downstream 2850 30135846 ~ 30142087 (-) True XLOC_006686
TCONS_00012887 mRNA downstream 110183 30033036 ~ 30034754 (-) True XLOC_006685
TCONS_00012885 mRNA downstream 116834 30007554 ~ 30028103 (-) False XLOC_006684
TCONS_00012886 mRNA downstream 117207 30009617 ~ 30027730 (-) True XLOC_006684
TCONS_00012892 mRNA upstream 2244 30152217 ~ 30161684 (-) False XLOC_006688
TCONS_00012894 mRNA upstream 429287 30579260 ~ 30645965 (-) False XLOC_006692
TCONS_00012897 mRNA upstream 505199 30655172 ~ 30662403 (-) False XLOC_006694
TCONS_00012901 mRNA upstream 515941 30665914 ~ 30700460 (-) False XLOC_006695
TCONS_00012902 mRNA upstream 534213 30684186 ~ 30685913 (-) True XLOC_006696
TCONS_00012879 other downstream 637336 29506660 ~ 29507601 (-) False XLOC_006678
TCONS_00012862 other downstream 1727779 28285862 ~ 28417158 (-) True XLOC_006661
TCONS_00012861 other downstream 1849523 28276898 ~ 28295414 (-) False XLOC_006661
TCONS_00012858 other downstream 1965387 28179434 ~ 28179550 (-) True XLOC_006658
TCONS_00012853 other downstream 2454661 27690160 ~ 27690276 (-) True XLOC_006654
TCONS_00012895 other upstream 482132 30632105 ~ 30632219 (-) True XLOC_006693
TCONS_00012900 other upstream 514846 30664819 ~ 30700459 (-) False XLOC_006695
TCONS_00012906 other upstream 705346 30855319 ~ 30872439 (-) True XLOC_006699
TCONS_00012916 other upstream 925860 31075833 ~ 31075947 (-) True XLOC_006705
TCONS_00012917 other upstream 976476 31126449 ~ 31127046 (-) True XLOC_006708

Expression Profile

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