RNA id: CI01000001_04976994_04988795.mRNA



Basic Information


Item Value
RNA id CI01000001_04976994_04988795.mRNA
length 4306
RNA type mRNA
GC content 0.47
exon number 24
gene id CI01000001_04976994_04988795
representative True

Chromosome Information


Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 4976347 ~ 4989082 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATATAAAATCCGAAGAAATGAATATAAGACAAAAATACGACAATAACACGAACACTGACGCAGTAGAATTACGCACAGGATACGCAGGTGCCTGAATGCAAATAGCTCTGTTGTGAGAAACGAATCACAGTTGCGGAAAGCGGAAGGGGGCGGAGACTTACAACAATACCAGTGGATTCATTTGCATGTGGAATTGTTTGGTTTGCCTGCTTCATTTTTAATGCGTCAGAGCGTTTTCAGAGTTTACCATTAACTCCTACTCAACACTTACAAAATGATACAAAAGCACTAATAATTATGATTTTTTTTTTTTTTTTACACTCAAACAAGATGACTCAAGGCAAGCAGGGCAATATTTGAGTATTTTGGTGCTCGTATGTTCCCTCACAACAAGACGGATGCTGTACACAGCAGCGATGAGAGCTCTGAAGTGTTGGAGGATTCCTGCCATACTTACGATCCTACAGCAAACATGGATTTTTGCTTTGGAAATTCCTCCTGAGGGTGAGGAAATGCTATTTTAACTCAGTTTTTATTTTGGTCCTTGTGACCAAAGGATACATGGCATTATTTACTATACATTGTCCTTTTAATTCGTTAAAATATTATATTTTTATATGTATATCCTCACAGTAAGGCAACCTCCAATGATCATTAAAGAGAGTGTTCAAGATCACATAGTAGATCCAGTTGACCCCATTATAGTGGAGTGTGAGGCAACCGGGAATCCACCTCCAGTGTTCACATGGACACGTGATGGGGTTTACCTGAATGTGGCACGGGATCCTCAGGTCAGCATGAGGCGGCGTTCTGGCACATTAGAGATTTTCTTCTGGGGTCGCCCTGATGACTATGAAGGCATCTATCAGTGCACAGCGACTAATGAGTTTGGCTCTGCTCTGTCCAGTCACATCCATCTGCGTGTCTCCAAGGCCCGTACTTGGTTGAAGGAGTATCTGGAGCCAGTCTCAGTGGTGGTAGGACTTCCTCTCATCCTTCCCTGCAATCCCCCAGTAGGCCCTCCAAAACCTGACACCTACTGGCTGAACAGCACTATGACGCCAATCCGGCAGGATCGTCGAGTATCAAAGGCAGAGAATGGAGATCTGTATTTCTCCAGTATCGTAGCAGAAGACGCTCTTACGAACTACGTATGTGTCGCCCGCTTCCCCTTCACGAACACCATCCAGCAGAAACCGCCCCTCATCCTGCAGGTGCTCACAGCTCGCATGGCAGCCCATACGGCACCCAAGTTTCTGAAACCCAAAGGAACTGTCAGCACAACAATTGCAATGCTGGGGGAAGAACTTGTTTTGGAGTGTTTTGCTGCTGGAGTTCCGACTCCCTCCATCAAATGGACTAAAGATTGGGAGGAGATGTCTATGACTGGAAAGAAGTTGGAGAATTTTAATAAGACTCTTAGAATAAAGAAGATCTCCATGGATGATGGAGGAGACTACATCTGCACCGCTTCAAACAGGATGGGCAGCCTGGACCACGTCATCACTGTCAGGGTCAAATCGGTTCCGTTCTGGGTGGAGAAGCCTGAGAGTCTGGTTCTGTCTCGTGATGACAGCGGTAGTATAGTGTGTAGAGCTGATGGTATTCCTCGACCCCAGATACAGTGGCTGGTCAACGGAGAGCCAATCAGTGATGCTCCTAAGAGTCCAGGCAGGCAGGTTTCAGGAGACACTTTGATTTTTGGTGGCGTGGTTCCAGACAGCGCTGCTGTGTTCCAGTGCAATGCTTCAAACCAGTATGGCTATATCATGGCAAATGCTTTCTTGGCCGTAATGGATATGAAGCCTCGTCTGCTGGGTCCCAGAGATGAACTGGTTAAAACAACAGAAGGCAATAATACTCATTTAGACTGCCCATATTTTGGCTCTCCTAAACCTGCCCTACGGTGGTCAAAAGGAGGACTAGGTACCTTAGAGGGAAATCGTTACGAGATTCTTCCAAATGGTACATTGGAAATCAGAAACACAAAGCTACAAGATCAGGGAGCATATGTGTGTGTTGCAAGCAATGTCATTGGGCGAGATGAGAAGGAGGTCCAACTAGAGGTCAAAGTAGTCATAAGAGGGAGTCTGGCTCGCTTTGATTGTAAGATTAAATTTGACCCGACTCTGGACGTTACCGTTACTTGGCTTAAGGACAAGAAGTTCTTGATCTTAGGAAGAAGGATGACAAAGGATGAGGATTCTCTGAGCATTGCTGATGTGTACAGAAGAGATGAAGGCGTCTACACCTGCAGGGTTAAAAGTGAACTGGAGGAGGTCACTGCCTCGGCCAAACTCATTGTGATGGACCGGCCGGACCCGCCCAGTGATTTAGAGATATCAGACCCATCAGAAAGGAGCGTCAGACTCACCTGGATTCCAGGACTGAGCAACCACAATCCTATTAAAGAGTACCTGGTTCAATATACTGAAGATCTCCTTGCAGACTATTGGCTAATACCGAGCGGCTGGAAGAACCTGACTAGTTACCCAGGCAACCTGAACTCTGTCGTTTTACAGCTAACACCATTCGTAGAGTACCGATTCCGGGTCATTGCTGTAAATGGCATCGGACCCAGTAAACCCAGCTGGCCATCTGCATACTACCAGACTGGAGGAGCTGTGCCTGATGCCATTCCAAGAAACATCCAAGGATTGGGAAGTGGAGTGTTCAGAAATAACATGGAAATCAGCTGGGAGCCATTGGAGTACAGAGAATGGAATGGGCCGAAACTGGGCTATATGGTTTGGTGGAGACGGAGAGATTCAAGGGAGGAGTGGAAGAACTACACAACATACTGGTGGTGTAGCTACATCATCTATGACACTGATACCTTCACGCCCTATGAAATTAAAGTTCAGGCCATCAACTTCTTCGGCTATGGCCCAGAATCCCCTGTTGTGATTGGTTACTCTGGGGAGGACCGTCCTGTTGCCGCTCCATCTGATCTGGCGGTGTCGGACATTGAAAGCACAAAGCTGACAGTCAATTGGGAACCAGTGGCACGAGCCGACATCATGGGTGAAATAAAGGAGTACAAAGTTTATTACTGGAGAGAGAGCAGTCGTCTGCCCTGGCACATTGTGAGCAGGAGGATTAAGACCAAGAGTTTTAAAGCTAATGGACCGCGTCTGTCTGGGACCCTGACTGGTCTTGTCCCATATAGTAACTACAGGATGTATATTGTAGTGGCCAATAACCGCTACGAGGGTCCACCCAGCAACACCATTGAGTTTCAGACACCTGAAGGAGTGCCCACGGTTCCCAGGTCGTTCAGGATCATGCACCGGCACTATGACACCATTTATCTAGACTGGGAGGAACCTGCAGAACCCAATGGCATTCTGACTGGGTACATTCTCAAATATCAGATGTTGAACATCACTCTGGGGGACAAAATCCAAGTGGAATACATTCCTCCTAACATCACGTACTTCTCTTTGCGCCGTTTGGACCGATACACTCGATACAAGTTCTCACTGGCAGCACAAACCGAGGCTGGAGTCGGGGAGGCATTCACAGAGGAATCACCCCATTTTACAACTGAGGAATATACCCGGGAGCAAGTGGACATTGTGACGCAGGGTTGGTTCATTGGCTTAATGTGTGCGGTTGCTCTCCTCGTTCTTATCATGCTCATAGTCTTTTTCATCAAGAGGAGCCGAGGAGGAAAGTACCCAGTGCGCGACAAGAAGGACTTTGCACTGGAGCCAATGGATGATAGAGAGAATGGAACGTTTGATTACAGGATAGCACGAGTGTCCACCATGCCCTATAGCAGACGTGAGGAGGAAAGTCGACAGGGGCGCAGTCAGGGTGCGATCGAGCACATTGGCAGGAGAACGAACAGTGACGACAGCCTCATGGAGTACGGTGAGGGGGAAGAGATCGAGTTTAACGAGGATGGCTCCTTCATCGGAGAGTACACTGGTGTCAGTAAGAGGAATATCGACAGGAGCCCGTACCATGACAGCTCTGAGCCCACGTCTCCTGTGGCCATCTACTCTTTTGCTTAGAGCTCATGGTGTCTGATTAAACCACTTTTTACACAGACGGACTGAGACTATGATCATTTAATCTGTTAGACAGGCTGGAAATGATGTATATAGGTGTGTTTTAAAGGTAAAACAGTGTTTCTGGGGATTTACAGAAAAAGTGCCAATCAGATTTGTTTTTCAAATCCACAAATCACGTGAGAGGAAGCCAAGCAAAGATGTCTTGATGTGTTTATCATGTTGATAAGAAGACTGAAAAGAAATGGCTGATGGAAGCTTGCTTTGCTGAACAAACTCATGTTCAGTTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU17642 lncRNA upstream 40357 4935371 ~ 4935990 (+) True G15789
TU17240 lncRNA upstream 174817 4800973 ~ 4801530 (+) True G15419
TU17237 lncRNA upstream 178553 4797476 ~ 4797794 (+) True G15416
TU17216 lncRNA upstream 217928 4753717 ~ 4758419 (+) True G15395
TU17199 lncRNA upstream 249607 4726188 ~ 4726740 (+) True G15389
TU17657 lncRNA downstream 14088 5003170 ~ 5003390 (+) True G15798
TU17659 lncRNA downstream 16740 5005822 ~ 5006037 (+) True G15800
TU17671 lncRNA downstream 52284 5041366 ~ 5041565 (+) True G15812
TU17676 lncRNA downstream 71725 5060807 ~ 5061182 (+) True G15817
TU17654 lncRNA downstream 81390 5074401 ~ 5074805 (+) False G15796
CI01000001_04962494_04971921.mRNA mRNA upstream 4116 4962494 ~ 4972231 (+) True CI01000001_04962494_04971921
CI01000001_04950531_04960550.mRNA mRNA upstream 15652 4950531 ~ 4960695 (+) True CI01000001_04950531_04960550
CI01000001_04936808_04943256.mRNA mRNA upstream 32892 4936808 ~ 4943455 (+) True CI01000001_04936808_04943256
CI01000001_04914279_04922772.mRNA mRNA upstream 52668 4914150 ~ 4923679 (+) True CI01000001_04914279_04922772
CI01000001_04901365_04901652.mRNA mRNA upstream 73780 4901275 ~ 4902567 (+) True CI01000001_04901365_04901652
CI01000001_04993860_04998535.mRNA mRNA downstream 4778 4993860 ~ 4998761 (+) True CI01000001_04993860_04998535
CI01000001_05051664_05059659.mRNA mRNA downstream 62447 5051529 ~ 5059940 (+) True CI01000001_05051664_05059659
CI01000001_05071017_05075175.mRNA mRNA downstream 80221 5069303 ~ 5075753 (+) False CI01000001_05071017_05075175
CI01000001_05075984_05079729.mRNA mRNA downstream 86902 5075984 ~ 5079731 (+) False CI01000001_05075984_05079729
CI01000001_05223340_05229184.mRNA mRNA downstream 234258 5223340 ~ 5229659 (+) True CI01000001_05223340_05229184
TU16602 other upstream 1354896 3616248 ~ 3616411 (+) True G14846
TU15116 other upstream 3305343 1668020 ~ 1671004 (+) True CI01000001_01668334_01670035
TU14532 other upstream 3931195 1043713 ~ 1045152 (+) True G13051
TU14049 other upstream 4484290 490574 ~ 492057 (+) True G12653
TU14066 other upstream 4491937 478386 ~ 478781 (+) True G12670
TU17650 other downstream 72136 5061218 ~ 5064704 (+) False G15794
TU17651 other downstream 72136 5061218 ~ 5063929 (+) True G15794
TU17699 other downstream 297667 5289881 ~ 5289956 (+) True G15838
TU17891 other downstream 722803 5711885 ~ 5714951 (+) True G15995
TU19033 other downstream 2543490 7532572 ~ 7540586 (+) False CI01000001_07531945_07539781

Expression Profile



Homologous


species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00042858 True 1174 mRNA 0.49 8 NC_007134.7 17899226 ~ 17907404 (+)