Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00012893 |
| length | 800 |
| lncRNA type | retained_intron |
| GC content | 0.37 |
| exon number | 4 |
| gene id | XLOC_006688 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007124.7 |
| NCBI id | CM002897.2 |
| chromosome length | 52186027 |
| location | 30152217 ~ 30161684 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006796 | phosphate-containing compound metabolic process | biological_process |
| GO:0005829 | cytosol | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0004427 | inorganic diphosphatase activity | molecular_function |
| GO:0000287 | magnesium ion binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-050417-375 | Predicted to enable inorganic diphosphatase activity and magnesium ion binding activity. Predicted to be involved in phosphate-containing compound metabolic process. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Orthologous to human PPA1 (inorganic pyrophosphatase 1). |
| ensembl_id | ENSDART00000141946 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00013487 | lncRNA | downstream | 172959 | 29984877 ~ 29985502 (-) | True | XLOC_006682 |
| TCONS_00012883 | lncRNA | downstream | 192677 | 29953470 ~ 29965784 (-) | True | XLOC_006681 |
| TCONS_00013486 | lncRNA | downstream | 215499 | 29937395 ~ 29942962 (-) | True | XLOC_006680 |
| TCONS_00013835 | lncRNA | downstream | 355452 | 29748962 ~ 29803009 (-) | False | XLOC_006679 |
| TCONS_00013488 | lncRNA | upstream | 84104 | 30245673 ~ 30250564 (-) | True | XLOC_006689 |
| TCONS_00013838 | lncRNA | upstream | 387840 | 30549409 ~ 30551509 (-) | True | XLOC_006690 |
| TCONS_00013839 | lncRNA | upstream | 406998 | 30568567 ~ 30571143 (-) | True | XLOC_006691 |
| TCONS_00012896 | lncRNA | upstream | 477976 | 30639545 ~ 30645909 (-) | True | XLOC_006692 |
| TCONS_00012899 | lncRNA | upstream | 494861 | 30656430 ~ 30657492 (-) | False | XLOC_006694 |
| TCONS_00012891 | mRNA | downstream | 7869 | 30145702 ~ 30150592 (-) | True | XLOC_006687 |
| TCONS_00012890 | mRNA | downstream | 8488 | 30144937 ~ 30149973 (-) | False | XLOC_006687 |
| TCONS_00012888 | mRNA | downstream | 15334 | 30135675 ~ 30143127 (-) | False | XLOC_006686 |
| TCONS_00012889 | mRNA | downstream | 16374 | 30135846 ~ 30142087 (-) | True | XLOC_006686 |
| TCONS_00012887 | mRNA | downstream | 123707 | 30033036 ~ 30034754 (-) | True | XLOC_006685 |
| TCONS_00012894 | mRNA | upstream | 417691 | 30579260 ~ 30645965 (-) | False | XLOC_006692 |
| TCONS_00012897 | mRNA | upstream | 493603 | 30655172 ~ 30662403 (-) | False | XLOC_006694 |
| TCONS_00012901 | mRNA | upstream | 504345 | 30665914 ~ 30700460 (-) | False | XLOC_006695 |
| TCONS_00012902 | mRNA | upstream | 522617 | 30684186 ~ 30685913 (-) | True | XLOC_006696 |
| TCONS_00012904 | mRNA | upstream | 542792 | 30704361 ~ 30713236 (-) | False | XLOC_006697 |
| TCONS_00012879 | other | downstream | 650860 | 29506660 ~ 29507601 (-) | False | XLOC_006678 |
| TCONS_00012862 | other | downstream | 1741303 | 28285862 ~ 28417158 (-) | True | XLOC_006661 |
| TCONS_00012861 | other | downstream | 1863047 | 28276898 ~ 28295414 (-) | False | XLOC_006661 |
| TCONS_00012858 | other | downstream | 1978911 | 28179434 ~ 28179550 (-) | True | XLOC_006658 |
| TCONS_00012853 | other | downstream | 2468185 | 27690160 ~ 27690276 (-) | True | XLOC_006654 |
| TCONS_00012895 | other | upstream | 470536 | 30632105 ~ 30632219 (-) | True | XLOC_006693 |
| TCONS_00012900 | other | upstream | 503250 | 30664819 ~ 30700459 (-) | False | XLOC_006695 |
| TCONS_00012906 | other | upstream | 693750 | 30855319 ~ 30872439 (-) | True | XLOC_006699 |
| TCONS_00012916 | other | upstream | 914264 | 31075833 ~ 31075947 (-) | True | XLOC_006705 |
| TCONS_00012917 | other | upstream | 964880 | 31126449 ~ 31127046 (-) | True | XLOC_006708 |
