RNA id: TCONS_00013488


Basic Information

Item Value
RNA id TCONS_00013488
length 306
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id XLOC_006689
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 30245673 ~ 30250564 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCCACCGCATGCTGCGATCTCATTCACACTGTTTTCCTGCACAATCAAGCGGAAGCCCCTGGAGAAGGGCAGGCACAGGCCCACCATCTGCTAACAGCGTCTGGAAGAGCCAGAACGGCTGCCAGGACCCAGGTGACGGAACTGGCCAACACAATCTTACAAATCCTTGCATGGGAAACCTGCAACTGTACCCACTGCCTCTCAGTTCTTCGATTTTATTCAATATCCGATTATTGGAGAAAGAAGAATAGTGGTACATCAGCAGGATGTTGGAACTTGAACAACCTGAATGCAACAGAAAAGGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012893 lncRNA downstream 84104 30158461 ~ 30161569 (-) True XLOC_006688
TCONS_00013487 lncRNA downstream 260171 29984877 ~ 29985502 (-) True XLOC_006682
TCONS_00012883 lncRNA downstream 279889 29953470 ~ 29965784 (-) True XLOC_006681
TCONS_00013486 lncRNA downstream 302711 29937395 ~ 29942962 (-) True XLOC_006680
TCONS_00013837 lncRNA downstream 442664 29754281 ~ 29803009 (-) True XLOC_006679
TCONS_00013838 lncRNA upstream 298845 30549409 ~ 30551509 (-) True XLOC_006690
TCONS_00013839 lncRNA upstream 318003 30568567 ~ 30571143 (-) True XLOC_006691
TCONS_00012896 lncRNA upstream 388981 30639545 ~ 30645909 (-) True XLOC_006692
TCONS_00012899 lncRNA upstream 405866 30656430 ~ 30657492 (-) False XLOC_006694
TCONS_00012898 lncRNA upstream 405866 30656430 ~ 30659381 (-) True XLOC_006694
TCONS_00012892 mRNA downstream 83989 30152217 ~ 30161684 (-) False XLOC_006688
TCONS_00012891 mRNA downstream 95081 30145702 ~ 30150592 (-) True XLOC_006687
TCONS_00012890 mRNA downstream 95700 30144937 ~ 30149973 (-) False XLOC_006687
TCONS_00012888 mRNA downstream 102546 30135675 ~ 30143127 (-) False XLOC_006686
TCONS_00012889 mRNA downstream 103586 30135846 ~ 30142087 (-) True XLOC_006686
TCONS_00012894 mRNA upstream 328696 30579260 ~ 30645965 (-) False XLOC_006692
TCONS_00012897 mRNA upstream 404608 30655172 ~ 30662403 (-) False XLOC_006694
TCONS_00012901 mRNA upstream 415350 30665914 ~ 30700460 (-) False XLOC_006695
TCONS_00012902 mRNA upstream 433622 30684186 ~ 30685913 (-) True XLOC_006696
TCONS_00012904 mRNA upstream 453797 30704361 ~ 30713236 (-) False XLOC_006697
TCONS_00012879 other downstream 738072 29506660 ~ 29507601 (-) False XLOC_006678
TCONS_00012862 other downstream 1828515 28285862 ~ 28417158 (-) True XLOC_006661
TCONS_00012861 other downstream 1950259 28276898 ~ 28295414 (-) False XLOC_006661
TCONS_00012858 other downstream 2066123 28179434 ~ 28179550 (-) True XLOC_006658
TCONS_00012853 other downstream 2555397 27690160 ~ 27690276 (-) True XLOC_006654
TCONS_00012895 other upstream 381541 30632105 ~ 30632219 (-) True XLOC_006693
TCONS_00012900 other upstream 414255 30664819 ~ 30700459 (-) False XLOC_006695
TCONS_00012906 other upstream 604755 30855319 ~ 30872439 (-) True XLOC_006699
TCONS_00012916 other upstream 825269 31075833 ~ 31075947 (-) True XLOC_006705
TCONS_00012917 other upstream 875885 31126449 ~ 31127046 (-) True XLOC_006708

Expression Profile

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