RNA id: TCONS_00012898


Basic Information

Item Value
RNA id TCONS_00012898
length 828
lncRNA type retained_intron
GC content 0.41
exon number 4
gene id XLOC_006694
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 30655172 ~ 30662403 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGTTGTTCAGCGTTGATGGTCTCCCTTCATTTAAAAGTCTTTCACTTGTAATGTGtgtgcatatttactgtacataacttgtcagtgaactatgagggcaaaaaaattaataaatacaaaaataaaataatcgttcgtTAATCGTAAtccagttaaaatgttcaattaatcgtgattttgattttaggccaaatcgctcaGTCCTAGTTATGAtaacctttctttctttttattttttgcaggatACATGAAGAAGCATCAGAACACTTTTCTGAGTCCTTCTTTTCCACTGCACAAACTACACTCCATTCAGAGAATGGGCTTTGGGACGAACAACAAGATCTTTGTTGAGTTTGAGCAGCCTTTCTGGGATGAAGACTGTGAACTTATTTACCTTGTATGGGAGGACGAGACCCATCTTACTGATGTTGTTTCTGATTTGAAGATGTCCTGGATTAGGAAGTTGACTGGGTTCACTGTGCTGAAGCCCACTGAAAGATTTGGACATGTGCTCTGTGGATGGATCGCAGGGCAGGAATCGGAGTACATGGAATCTCTGTCTGAACTAGAAGTGCTGCAGACTGTCACACAACTCCTTCGCATATTTACTgGAAATCCAACTATTATGCCAAGGAAGCTGTTACGATCTCAATGGTTCCATGAGCCCTATTCCTGTGGATCTTACTCCTACGTGGCCAAAGGTTGCTCAGGATATGACATCGATAACCTCGCTGAACCCTTGCCGTTGAAAGGCTCCAACTCAAAGCCTTTGCAGGTGTTATTTGCAGGAGAAGCTACACACAGGTCTTTCTTCTCTACGGTGCATG

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function
GO:0046592 polyamine oxidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-204 Predicted to enable polyamine oxidase activity. Orthologous to human PAOX (polyamine oxidase).

Ensembl:

ensembl_id ENSDART00000143260

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012896 lncRNA downstream 10521 30639545 ~ 30645909 (-) True XLOC_006692
TCONS_00013839 lncRNA downstream 85287 30568567 ~ 30571143 (-) True XLOC_006691
TCONS_00013838 lncRNA downstream 104921 30549409 ~ 30551509 (-) True XLOC_006690
TCONS_00013488 lncRNA downstream 405866 30245673 ~ 30250564 (-) True XLOC_006689
TCONS_00012893 lncRNA downstream 494861 30158461 ~ 30161569 (-) True XLOC_006688
TCONS_00012903 lncRNA upstream 30900 30690281 ~ 30700460 (-) True XLOC_006695
TCONS_00013840 lncRNA upstream 149582 30808963 ~ 30812183 (-) True XLOC_006698
TCONS_00012911 lncRNA upstream 383133 31042514 ~ 31045645 (-) False XLOC_006703
TCONS_00012912 lncRNA upstream 385421 31044802 ~ 31051156 (-) True XLOC_006703
TCONS_00012913 lncRNA upstream 393155 31052536 ~ 31060030 (-) False XLOC_006704
TCONS_00012894 mRNA downstream 10465 30579260 ~ 30645965 (-) False XLOC_006692
TCONS_00012892 mRNA downstream 494746 30152217 ~ 30161684 (-) False XLOC_006688
TCONS_00012891 mRNA downstream 505838 30145702 ~ 30150592 (-) True XLOC_006687
TCONS_00012890 mRNA downstream 506457 30144937 ~ 30149973 (-) False XLOC_006687
TCONS_00012889 mRNA downstream 514343 30135846 ~ 30142087 (-) True XLOC_006686
TCONS_00012901 mRNA upstream 6533 30665914 ~ 30700460 (-) False XLOC_006695
TCONS_00012902 mRNA upstream 24805 30684186 ~ 30685913 (-) True XLOC_006696
TCONS_00012904 mRNA upstream 44980 30704361 ~ 30713236 (-) False XLOC_006697
TCONS_00012905 mRNA upstream 47941 30707322 ~ 30713236 (-) True XLOC_006697
TCONS_00012907 mRNA upstream 325666 30985047 ~ 31008275 (-) False XLOC_006700
TCONS_00012895 other downstream 24211 30632105 ~ 30632219 (-) True XLOC_006693
TCONS_00012879 other downstream 1148829 29506660 ~ 29507601 (-) False XLOC_006678
TCONS_00012862 other downstream 2239272 28285862 ~ 28417158 (-) True XLOC_006661
TCONS_00012861 other downstream 2361016 28276898 ~ 28295414 (-) False XLOC_006661
TCONS_00012858 other downstream 2476880 28179434 ~ 28179550 (-) True XLOC_006658
TCONS_00012900 other upstream 5438 30664819 ~ 30700459 (-) False XLOC_006695
TCONS_00012906 other upstream 195938 30855319 ~ 30872439 (-) True XLOC_006699
TCONS_00012916 other upstream 416452 31075833 ~ 31075947 (-) True XLOC_006705
TCONS_00012917 other upstream 467068 31126449 ~ 31127046 (-) True XLOC_006708
TCONS_00012925 other upstream 534104 31193485 ~ 31205193 (-) True XLOC_006710

Expression Profile

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