RNA id: CI01000001_06981183_06981774.mRNA


Basic Information

Item Value
RNA id CI01000001_06981183_06981774.mRNA
length 408
RNA type mRNA
GC content 0.42
exon number 3
gene id CI01000001_06981183_06981774
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 6981183 ~ 6981804 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGAAGCAGCAGAGCTCTAAAGGTGGAAAGAAGAAGAAGCAGGTCCTGAAGTTCACGCTGGACTGCACGCATCCCGTTGAAGATGGTATTATGGATGCTGCCAACTTTGAGCAGTTCCTACAGGAGCGCATCAAAGTCAACGGTAAAGCAGGAAACCTGGGAGGTGGAGTTATCACCATTGAAAGAAGCAAGAGCAAAATCACAGTTTCTTCTGAGGTGCCCTTCTCCAAAAGGTACCTGAAGTATCTCACAAAGAAATACTTAAAGAAGAACAATCTCAGAGACTGGTTGCGTGTTGTAGCTAACACTAAAGAAAGCTATGAACTTCGCTACTTCCAGATCAACCAAGATGAGGAAGAAGAGGAGGATGAGGATTAAATTCTTGTTTTTTTTTTTTTGTACATTTAA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K02891 RP-L22e, RPL22; large subunit ribosomal protein L22e

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18977 lncRNA upstream 35032 6936142 ~ 6946151 (+) True G16937
TU18962 lncRNA upstream 62921 6917686 ~ 6918262 (+) True G16922
TU18253 lncRNA upstream 180802 6800168 ~ 6800381 (+) True G16317
TU18214 lncRNA upstream 248258 6723809 ~ 6732925 (+) True CI01000001_06718133_06747744
TU18220 lncRNA upstream 307672 6672182 ~ 6673511 (+) True G16284
TU19054 lncRNA downstream 109949 7091753 ~ 7123993 (+) True G16977
TU19101 lncRNA downstream 170290 7152094 ~ 7152425 (+) True G17019
TU19046 lncRNA downstream 297439 7279243 ~ 7284904 (+) True G16970
TU19141 lncRNA downstream 334860 7316664 ~ 7319030 (+) True G17057
TU19145 lncRNA downstream 341482 7323286 ~ 7323615 (+) True G17061
CI01000001_06960133_06963752.mRNA mRNA upstream 16753 6960133 ~ 6964430 (+) True CI01000001_06960133_06963752
CI01000001_06956478_06959048.mRNA mRNA upstream 21563 6955499 ~ 6959620 (+) True CI01000001_06956478_06959048
CI01000001_06948672_06949034.mRNA mRNA upstream 32149 6948586 ~ 6949034 (+) True CI01000001_06948672_06949034
CI01000001_06939316_06939879.mRNA mRNA upstream 40478 6939233 ~ 6940705 (+) True CI01000001_06939316_06939879
CI01000001_06921000_06929478.mRNA mRNA upstream 50824 6921000 ~ 6930359 (+) True CI01000001_06921000_06929478
CI01000001_06996957_07040074.mRNA mRNA downstream 15153 6996957 ~ 7040081 (+) True CI01000001_06996957_07040074
CI01000001_07045345_07052918.mRNA mRNA downstream 63541 7045345 ~ 7052970 (+) True CI01000001_07045345_07052918
CI01000001_07056922_07065716.mRNA mRNA downstream 75118 7056922 ~ 7066543 (+) True CI01000001_07056922_07065716
CI01000001_07208833_07215412.mRNA mRNA downstream 226479 7208283 ~ 7215507 (+) True CI01000001_07208833_07215412
CI01000001_07231558_07266828.mRNA mRNA downstream 249754 7231558 ~ 7266902 (+) True CI01000001_07231558_07266828
TU17891 other upstream 1266232 5711885 ~ 5714951 (+) True G15995
TU17699 other upstream 1691227 5289881 ~ 5289956 (+) True G15838
TU17650 other upstream 1916479 5061218 ~ 5064704 (+) False G15794
TU17651 other upstream 1917254 5061218 ~ 5063929 (+) True G15794
TU16602 other upstream 3359732 3616248 ~ 3616411 (+) True G14846
TU19033 other downstream 550768 7532572 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19037 other downstream 550836 7532640 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19034 other downstream 550960 7532764 ~ 7540460 (+) True CI01000001_07531945_07539781
TU19348 other downstream 1050320 8032124 ~ 8032483 (+) True G17234
TU19478 other downstream 2234218 9216022 ~ 9228859 (+) True G17353

Expression Profile