RNA id: TCONS_00012905


Basic Information

Item Value
RNA id TCONS_00012905
length 699
RNA type mRNA
GC content 0.42
exon number 4
gene id XLOC_006697
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 30704361 ~ 30713236 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTGCGGCTCAAAATACCAGATTACTTACCATGCAGCTGTGCTGGCACTGCCATCTTTGACTTTCTTTCTAAACTgtcaaaaaataaactattgataGAGAACATTAGCTGTAATCAAATGTGCTAAAGGCAAAAGCATCTCATTTCGGCCATGAAGGGCTCAGCTTTGTGGGTAATTGTGGAATGTTCCTGCAGAGTACTCGGCATCTCCACTGCAGCAGACTGTCCTCGCTGGTGATTATGATTTTTGAAGTCGCCTATTTTATTGACGCTCTGTTGGCTACATGTCTTCCTTGTCCACCAACTTGGAAGATGTTCATTCTTTGGAAGAAGATGGCCAAAGTTGGAGGTTTTCAAAAATTCCTGTACTACACAATGATGTCTGTGATGTGTTTCCTGCATCCGGTGCTTGTATGGCATGCTGTGATTCCAGGGATTATGCTGGTTGTGACCGGATTCTTTAACTTCATACTGAGCAAAAAAAAGAAGTCAGATGTGCCTAAAGAGTCCAGAGTTTTCTATGGTGACCCGGCTCTGTCTTCTGTCTGTGTCAAAGATAGAGGAGACTCTGAAGACACGTTCTCTTTCTTTAACGTCATCTCCGGCAAAAGAGCATCTTTTATTCCTAACAACAGCCGAATTCATGACTTAACAGACAGGGATCAGTCATTGAAGAATGGTCAACACAAgaaaagacaa

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-175 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM72 (transmembrane protein 72).

Ensembl:

ensembl_id ENSDART00000142221

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012903 lncRNA downstream 6862 30690281 ~ 30700460 (-) True XLOC_006695
TCONS_00012898 lncRNA downstream 47941 30656430 ~ 30659381 (-) True XLOC_006694
TCONS_00012899 lncRNA downstream 49830 30656430 ~ 30657492 (-) False XLOC_006694
TCONS_00012896 lncRNA downstream 61413 30639545 ~ 30645909 (-) True XLOC_006692
TCONS_00013839 lncRNA downstream 136179 30568567 ~ 30571143 (-) True XLOC_006691
TCONS_00013840 lncRNA upstream 95727 30808963 ~ 30812183 (-) True XLOC_006698
TCONS_00012911 lncRNA upstream 329278 31042514 ~ 31045645 (-) False XLOC_006703
TCONS_00012912 lncRNA upstream 331566 31044802 ~ 31051156 (-) True XLOC_006703
TCONS_00012913 lncRNA upstream 339300 31052536 ~ 31060030 (-) False XLOC_006704
TCONS_00012914 lncRNA upstream 344129 31057365 ~ 31061033 (-) False XLOC_006704
TCONS_00012901 mRNA downstream 6862 30665914 ~ 30700460 (-) False XLOC_006695
TCONS_00012902 mRNA downstream 21409 30684186 ~ 30685913 (-) True XLOC_006696
TCONS_00012897 mRNA downstream 44919 30655172 ~ 30662403 (-) False XLOC_006694
TCONS_00012894 mRNA downstream 61357 30579260 ~ 30645965 (-) False XLOC_006692
TCONS_00012892 mRNA downstream 545638 30152217 ~ 30161684 (-) False XLOC_006688
TCONS_00012907 mRNA upstream 271811 30985047 ~ 31008275 (-) False XLOC_006700
TCONS_00012908 mRNA upstream 272263 30985499 ~ 30996072 (-) True XLOC_006700
TCONS_00012909 mRNA upstream 302311 31015547 ~ 31017960 (-) True XLOC_006701
TCONS_00012910 mRNA upstream 311475 31024711 ~ 31025505 (-) True XLOC_006702
TCONS_00012918 mRNA upstream 434282 31147518 ~ 31166559 (-) False XLOC_006709
TCONS_00012900 other downstream 6863 30664819 ~ 30700459 (-) False XLOC_006695
TCONS_00012895 other downstream 75103 30632105 ~ 30632219 (-) True XLOC_006693
TCONS_00012879 other downstream 1199721 29506660 ~ 29507601 (-) False XLOC_006678
TCONS_00012862 other downstream 2290164 28285862 ~ 28417158 (-) True XLOC_006661
TCONS_00012861 other downstream 2411908 28276898 ~ 28295414 (-) False XLOC_006661
TCONS_00012906 other upstream 142083 30855319 ~ 30872439 (-) True XLOC_006699
TCONS_00012916 other upstream 362597 31075833 ~ 31075947 (-) True XLOC_006705
TCONS_00012917 other upstream 413213 31126449 ~ 31127046 (-) True XLOC_006708
TCONS_00012925 other upstream 480249 31193485 ~ 31205193 (-) True XLOC_006710
TCONS_00012930 other upstream 633359 31346595 ~ 31351772 (-) True XLOC_006712

Expression Profile

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