RNA id: CI01000001_09164619_09166621.mRNA


Basic Information

Item Value
RNA id CI01000001_09164619_09166621.mRNA
length 374
RNA type mRNA
GC content 0.48
exon number 2
gene id CI01000001_09164619_09166621
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 9164541 ~ 9166725 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTATAAAGGGCGCTGGGAGGCAAAGACTGAATTAGACACAGAGCATCTGAATCCTGCATCACTTTATAAAAGTAAAATATGGGGAATATTGAAAGCGTGGACGGGCAATCTGAGATGAAGCATCATATCATGCCCTTGAAAGTTCCCATGCCTGACCCATCAGAGCTGGAAGAAAGATTTGCCATAGTTTTGACACACGCTCTCAGACAGACAGCGCATAATGATGTCATAGGTGTAGGCTGTGCCTGCACAGTAATATCCGTGCAATGATGGCTTTAACAGGAGCTTAGCACACAAGAGGGCGGGCTGTGTGTGGAGATGGATCAGGGGATGAGACCCCTGGGTTACATCAGACGACTTCATGCGCCCCGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19443 lncRNA upstream 18986 9144411 ~ 9145555 (+) True CI01000001_09132867_09145278
TU19635 lncRNA upstream 20707 9143361 ~ 9143834 (+) True G17507
TU19513 lncRNA upstream 73156 9088542 ~ 9091385 (+) True G17388
TU19510 lncRNA upstream 135590 9028681 ~ 9028951 (+) True G17385
TU19484 lncRNA upstream 136022 9028111 ~ 9028519 (+) True G17359
TU19451 lncRNA downstream 46731 9213456 ~ 9273959 (+) True G17326
TU19474 lncRNA downstream 97791 9264516 ~ 9291390 (+) True G17349
TU19694 lncRNA downstream 214410 9381135 ~ 9381660 (+) True G17566
TU19514 lncRNA downstream 217174 9383899 ~ 9384640 (+) True CI01000001_09383903_09384322
TU19709 lncRNA downstream 306886 9473611 ~ 9473929 (+) True G17581
CI01000001_09147684_09162673.mRNA mRNA upstream 1326 9147684 ~ 9163215 (+) True CI01000001_09147684_09162673
CI01000001_09132867_09145278.mRNA mRNA upstream 19022 9132867 ~ 9145519 (+) False CI01000001_09132867_09145278
CI01000001_09113045_09130978.mRNA mRNA upstream 33219 9113045 ~ 9131322 (+) True CI01000001_09113045_09130978
CI01000001_09059083_09101251.mRNA mRNA upstream 63189 9058864 ~ 9101352 (+) True CI01000001_09059083_09101251
CI01000001_09039724_09045754.mRNA mRNA upstream 118426 9039724 ~ 9046115 (+) True CI01000001_09039724_09045754
CI01000001_09186450_09203866.mRNA mRNA downstream 19608 9186333 ~ 9203866 (+) True CI01000001_09186450_09203866
CI01000001_09226223_09227218.mRNA mRNA downstream 59364 9226089 ~ 9227246 (+) True CI01000001_09226223_09227218
CI01000001_09267532_09267951.mRNA mRNA downstream 100737 9267462 ~ 9268132 (+) True CI01000001_09267532_09267951
CI01000001_09285920_09289361.mRNA mRNA downstream 119063 9285788 ~ 9289441 (+) True CI01000001_09285920_09289361
CI01000001_09308544_09311741.mRNA mRNA downstream 139976 9306701 ~ 9312011 (+) False CI01000001_09308544_09311741
TU19348 other upstream 1132058 8032124 ~ 8032483 (+) True G17234
TU19033 other upstream 1623955 7532572 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19037 other upstream 1623955 7532640 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19034 other upstream 1624081 7532764 ~ 7540460 (+) True CI01000001_07531945_07539781
TU17891 other upstream 3449590 5711885 ~ 5714951 (+) True G15995
TU19478 other downstream 49297 9216022 ~ 9228859 (+) True G17353
TU19479 other downstream 67738 9234463 ~ 9240677 (+) True G17354
TU19459 other downstream 251603 9418328 ~ 9438063 (+) True G17334
TU21219 other downstream 1073175 10239900 ~ 10241492 (+) True G18896
TU21190 other downstream 1090387 10257112 ~ 10260714 (+) True G18873

Expression Profile