RNA id: TCONS_00012915


Basic Information

Item Value
RNA id TCONS_00012915
length 974
lncRNA type lincRNA
GC content 0.42
exon number 4
gene id XLOC_006704
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 31052536 ~ 31061816 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCAACAAAGTGTATGTactgtgttgttgttttagaataacaatttgtttttctaatattttataaGGTGTCAGAGAGTGGCAGTGTTCTTGATGATCTGGATCTTCAAAGCTTGGCACTGCAGGTTGGAGAAGCTCTCGTCTCTCATGTACAGCAGAGAGTGGCAGAGAAGCCTGCAGAGGAAGCACGATATGAACTGGAGCAGTTTtttcagaggtcagaggtcaaaagCAACCAAGGATGGCTTCTGCTTAAATCAATATCTTTCTTGTCCAACAGAGATACTGAGGTTGGTGTTATGATCAAGACGGGCCTGCCTGCGGCGCTAGTCAAATCTCTGTATCTGTTTGTAGCTTTGCCTCCCCGAAAAGAGAATTCTGACTCTTCACCAAAAGATGTCAAAGAGGATCTCAAATGTTCTTTTCAGGACACTCTTATTCAGGGATTTTTGCAACTGTGCAGGCATGTGTGTTTTGTGGAGGTTTTGCTGGAGACCCAGGAGCTGTCGAGTGTGATCATCTCTCTCACTCTACTGTGGGATCAGTGCAGCTCTTCATGGAGACAGCAGGCGTCTCGAGTCCTCAGATCAGTGTCTGCGGCACAAGCTCACAACACTGTATCTGCACTGCAAGGTCAGCAAAGACCAGAACATTCTTCATCCATCCGAATGTGTCTTATTAGATGATGTTTTTCGCAATAAATGGTTTAGGTAATAGGTCTACGTAATATCtatttttatcaacacatttattttgttttggctAAATGTGGATAGGCACTGTATGAACACTGTCAGATGACCATAATATTGATTTACTTTCACATGATGCTGATTTGAGTTACTGAGCTGTGCCAGATCTCTGATTGCATAACATTTTGGTTTTAGACATTTACTGAGTGTAGACAGGGTTGCAGTTAAATGTTGAGCACCCTTTTTGATGGTCCTTGGTCTAGGACTAGTAGCAATAGTAGAG

Function

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0065009 regulation of molecular function biological_process
GO:0043632 modification-dependent macromolecule catabolic process biological_process
GO:0043087 regulation of GTPase activity biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0019941 modification-dependent protein catabolic process biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0051336 regulation of hydrolase activity biological_process
GO:0030695 GTPase regulator activity molecular_function
GO:0005096 GTPase activator activity molecular_function
GO:0031267 small GTPase binding molecular_function
GO:0019899 enzyme binding molecular_function
GO:0051020 GTPase binding molecular_function
GO:0008047 enzyme activator activity molecular_function
GO:0060589 nucleoside-triphosphatase regulator activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194382

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012912 lncRNA downstream 8128 31044802 ~ 31051156 (-) True XLOC_006703
TCONS_00012911 lncRNA downstream 13639 31042514 ~ 31045645 (-) False XLOC_006703
TCONS_00013840 lncRNA downstream 247101 30808963 ~ 30812183 (-) True XLOC_006698
TCONS_00012903 lncRNA downstream 358824 30690281 ~ 30700460 (-) True XLOC_006695
TCONS_00012898 lncRNA downstream 399903 30656430 ~ 30659381 (-) True XLOC_006694
TCONS_00013841 lncRNA upstream 27770 31089586 ~ 31092400 (-) True XLOC_006706
TCONS_00013842 lncRNA upstream 41091 31102907 ~ 31122760 (-) False XLOC_006707
TCONS_00013843 lncRNA upstream 43360 31105176 ~ 31122760 (-) False XLOC_006707
TCONS_00013844 lncRNA upstream 46710 31108526 ~ 31122838 (-) True XLOC_006707
TCONS_00012923 lncRNA upstream 98371 31160187 ~ 31166605 (-) False XLOC_006709
TCONS_00012910 mRNA downstream 33779 31024711 ~ 31025505 (-) True XLOC_006702
TCONS_00012909 mRNA downstream 41324 31015547 ~ 31017960 (-) True XLOC_006701
TCONS_00012907 mRNA downstream 51009 30985047 ~ 31008275 (-) False XLOC_006700
TCONS_00012908 mRNA downstream 63212 30985499 ~ 30996072 (-) True XLOC_006700
TCONS_00012905 mRNA downstream 346048 30707322 ~ 30713236 (-) True XLOC_006697
TCONS_00012918 mRNA upstream 85702 31147518 ~ 31166559 (-) False XLOC_006709
TCONS_00012919 mRNA upstream 86121 31147937 ~ 31166563 (-) False XLOC_006709
TCONS_00012920 mRNA upstream 86122 31147938 ~ 31164749 (-) False XLOC_006709
TCONS_00012922 mRNA upstream 86421 31148237 ~ 31167461 (-) False XLOC_006709
TCONS_00012921 mRNA upstream 86421 31148237 ~ 31167461 (-) False XLOC_006709
TCONS_00012906 other downstream 186845 30855319 ~ 30872439 (-) True XLOC_006699
TCONS_00012900 other downstream 358825 30664819 ~ 30700459 (-) False XLOC_006695
TCONS_00012895 other downstream 427065 30632105 ~ 30632219 (-) True XLOC_006693
TCONS_00012879 other downstream 1551683 29506660 ~ 29507601 (-) False XLOC_006678
TCONS_00012862 other downstream 2642126 28285862 ~ 28417158 (-) True XLOC_006661
TCONS_00012916 other upstream 14017 31075833 ~ 31075947 (-) True XLOC_006705
TCONS_00012917 other upstream 64633 31126449 ~ 31127046 (-) True XLOC_006708
TCONS_00012925 other upstream 131669 31193485 ~ 31205193 (-) True XLOC_006710
TCONS_00012930 other upstream 284779 31346595 ~ 31351772 (-) True XLOC_006712
TCONS_00012938 other upstream 362774 31424590 ~ 31440940 (-) False XLOC_006716

Expression Profile

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