RNA id: TU21193


Basic Information

Item Value
RNA id TU21193
length 843
RNA type TUCP
GC content 0.26
exon number 2
gene id G18875
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10393557 ~ 10395953 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTGTTTTGTTTTTTGTTTAATCAAAACTGCAGCACTGTGTTCAGAGTATTTCACTTCAACATGCATGAAAAATAGTAAATATATATGGTACACATATGTACATTACAAGGACAATTTCAAAAACTATCAGTCCAACTTGGAGTGAGGCTATTTCCCATGAAAGACATACTCTTAAAACAACCTTTTATCTCTTCTTTTTTTTCTTTTCTTTAGCCTATAAGATCATTCTATTCTAAAGGACTTCTGTTTTGTTCAGTCTGTCTATCTCAGGGAAACTGTTAAATTTTACTAGCATGAAATAATTCCATAATAAATTATTTGTGCATTATGTTGGAATTATGGATCATTAAGTCCATCAAGACAGAAATCTGGTACAACTTTAAAGTGATTAAAGTGAGAATCAAACAGGGAGCATCTCAAGGCATTCTTATTAATCTTTACAAATAAAAATAACTACAAGTATTTGAGTACAAAGTATTAGAAGAACAAAAAGAGAATGAGAAAAGAAAGTCTAAGAATTTCTACTTTTCTGTCTTACAACACAAGAAAAAAAAAAAAAATTATAGTTATTTCTATAGTCCTGGCAGCGAATAAAGAAAAAGTGCCAGTGAAGCTAAAAATTCTCCATTCTGCTCATTTCAGGCCAACAATCCTCTATATGGTTCTGCTGAACGACTACAGTGCCAGCACATGATGAACAGTAAAGCCAGGGTCAACACTTTAACCAGGAGTCATTCATGAGATATCGGTCAAGTGGTAAGTTTGATAAGCTGTTTGAAAAAAAAAAAAAACCTGACAATCTCTGAGACTCCAAACAGAAAAATAACCCAGAAAGTTGTTTCTCTTTGAGTTTTTATCAGGGACTGTGTATGTTTATGTGTGGATGAGCCAGCAGAGAAACACATAGTGTTACAGAGTATCAGGATATCAACTTTGTGAAAGTGACTGAATGGAGGGTACAGAGGCACTAGGGCTGTATTATTGTAAAAATGAGCGGAGAACTATGGAAATCCATTTCCACGTAATAAAATGCTCTGGTAAATCATAATTATGACATACTAAGTCATTATGAGATCTTTTAATCTCAAGTTCTACTTCTTATGTCTTAATTATGACTTATCTCATAATATAAACTTGTCATAATTTGGATTTTTTTATCTTATTATTGAGTTTTTGTTGTAATTATGACTTTAATGCCACACATTTAATGTTTTATCTCTTAATTTATCTCATTATTATGAGTTTTTATGTCATAGTTTTAGTTTTTTCTTGCGTGGCAGGAATGGGATTCAATAAACAGCAGCAGGGTTACAAAGTTTAGTTAATAATAAAAAAGTCTAAGACTACTTTAAGAGCTTTAACTCATTATGGCCAACTTAACTCGGTCTAAAGTTGAATTGAAAACATTGTGGCTAACTTTGGAAAGGCAGTATTTCTCAAGACAGTGGACTGTGCGCAAGGGTCCTGATAACAGTTCATCATACGTGATGACCTCGGACAGTATGTTATTTGCGGTATCTGAGTTTGTCGTACACAAGAAAACAAAGATAGGACAAGAAAAACCGAGGTTCCGTAGCCCAAACTGAATGCAATGTGCCAATACAATACAGTTTATATATAGCAAGAAGTTTGCATGCTAACAAGGCAGTCTTAGTGTATCAGTCCTTCACAAACTGCTAATTCTGTTGTAGATCACTGTACACCCACACGGTAAGCACACATGCACACGTCGATTATAAACGTATATAACAGGTTAAAAATGAGGTAAGATGAGCGAAGGTAAGATGAGGGGGGTGGCCACCTGAAAACTAAAAAAAAATGCTCTAAAATAGCAAGGTAAAAGATCCTACAGAACGTTAAAGCATCATGTTTCTCTCAAACTGCAGCGTGTGTATGTGCATATGTCTACGGGGATACGTTTAATGACAGGAAGTGCTTTGCAGTCCTACAGCCAGTGGAGGAGCAGGAGGAAGTTGAAGGAAGGAGCAGAAGATACAGAGGATGCAAAGGAGAGCGTGGTTTGGAGTCCAGCCCCCATAGTCTATGGCATAGTGAACAACAATCTGCTTCCGTCTCTCTCTATATGTATACATAGTCCCAGTTTCATTCCCAGAATGCAGCTGAGCTCCAGTTCAGAGCGTGATGGTGTGAGAGGGAACCAGACTAAAGAATGGGAACAGAGTGCATTCTCCTCTCGCAGATCTGCCCCTCTCCTGGGATGCGGAGAGTCCCGGGCAGACTGTTAGCTGCTCTCATCATCTGTTGGACGGGTGGGACTGTGTCGCCATGATGACGTGCGATGGCCCACCGCTCTCCCCTCGCTGGCTGCCCATCCCTGCCAGCACCGACATGGCCACCGCCTCAGCCGCAGCACGGGAGCTCAGGCCATTGGGCCCTACTGTGGACGAGGGGCTGTGGGCCAGAGAGCTGTGCTGAATGACCGGTGCCGGGGAGCCCGTGGGCTCAGACGTCTCTTTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21194 lncRNA upstream 1959 10390688 ~ 10391598 (+) True G18876
TU21200 lncRNA upstream 49436 10340037 ~ 10344121 (+) True G18878
TU21202 lncRNA upstream 55408 10336887 ~ 10338149 (+) True G18880
TU21192 lncRNA upstream 57641 10284763 ~ 10335916 (+) True G18874
TU21206 lncRNA upstream 73482 10304931 ~ 10320075 (+) True G18884
TU21204 lncRNA downstream 5525 10402230 ~ 10403910 (+) True G18882
TU21284 lncRNA downstream 35252 10431957 ~ 10432409 (+) False G18951
TU21285 lncRNA downstream 35390 10432095 ~ 10433760 (+) True G18951
TU21301 lncRNA downstream 37514 10434219 ~ 10434542 (+) True G18967
TU21302 lncRNA downstream 39065 10435770 ~ 10435995 (+) True G18968
CI01000001_10328133_10329110.mRNA mRNA upstream 64447 10328040 ~ 10329110 (+) True CI01000001_10328133_10329110
CI01000001_10321783_10325266.mRNA mRNA upstream 68252 10321647 ~ 10325305 (+) True CI01000001_10321783_10325266
CI01000001_10150798_10152858.mRNA mRNA upstream 240619 10150373 ~ 10152938 (+) True CI01000001_10150798_10152858
CI01000001_10141190_10146911.mRNA mRNA upstream 245499 10141190 ~ 10148058 (+) True CI01000001_10141190_10146911
CI01000001_10093069_10104108.mRNA mRNA upstream 287858 10092902 ~ 10105699 (+) True CI01000001_10093069_10104108
CI01000001_10420931_10426716.mRNA mRNA downstream 23613 10420318 ~ 10427147 (+) True CI01000001_10420931_10426716
CI01000001_10525795_10530510.mRNA mRNA downstream 126557 10523262 ~ 10530543 (+) True CI01000001_10525795_10530510
CI01000001_10538498_10539667.mRNA mRNA downstream 141683 10538388 ~ 10539702 (+) False CI01000001_10538498_10539667
CI01000001_10573770_10582123.mRNA mRNA downstream 177065 10573770 ~ 10582238 (+) True CI01000001_10573770_10582123
CI01000001_10582439_10582802.mRNA mRNA downstream 185673 10582378 ~ 10582821 (+) True CI01000001_10582439_10582802
TU21188 other upstream 112188 10271146 ~ 10281369 (+) True G18872
TU21190 other upstream 132843 10257112 ~ 10260714 (+) True G18873
TU21219 other upstream 152065 10239900 ~ 10241492 (+) True G18896
TU19459 other upstream 955494 9418328 ~ 9438063 (+) True G17334
TU19479 other upstream 1152880 9234463 ~ 9240677 (+) True G17354
TU21268 other downstream 78279 10474984 ~ 10476389 (+) True G18937
TU21318 other downstream 141767 10538472 ~ 10539750 (+) False CI01000001_10538498_10539667
TU21319 other downstream 141767 10538472 ~ 10539846 (+) True CI01000001_10538498_10539667
TU21382 other downstream 454219 10850924 ~ 10853983 (+) True G19039
TU21702 other downstream 1104489 11501194 ~ 11558673 (+) True G19314

Expression Profile