RNA id: TU21319


Basic Information

Item Value
RNA id TU21319
length 553
RNA type TUCP
GC content 0.46
exon number 4
gene id CI01000001_10538498_10539667
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10538388 ~ 10539846 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCTCTCTCATGCCTCTCTAAATCAAGATGACTAAGAAGAGGAGGAATAACGGTCGTGCCAAGAAGGGACGTGGGCATGTCCAGCCCATCCGCTGCACAAACTGTGCCCGGTGTGTGCCCAAGGACAAGGCCATCAAGAAGTTTGTCATCAGAAATATCGTGGAGGCTGCGGCTGTAAGGGACATCTCTGAAGCCAGTGTGTTTGACTCCTACGTTTTGCCCAAACTGTATGTGAAGCTGCACTACTGTGTCAGCTGTGCCATCCACAGCAAAGTGGTGAGGAACCGCTCTCGTGAGGCCAGGAAGGACCGTACGCCTCCTCCACGCTTCAGGCCCGCTGGTGGTCCCCCACGAGCCCCTCCAAAACCAATGTGATCTGGAGATATTTGCATACATTTTTATGTAAAGAAATAAAGGTGACTAAAACTAAAATATGTTCTCTTGTTTAATCAAATGAAAATTTGCTGTCATCTAATGTAAGAAAGGTTATATGGGGAAAAAATAAATGTTGGACCTTAAATTTAAGTTTCTACATTTAAGGCAAAAAAATGGTG

Function

GO:

id name namespace
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process

KEGG:

id description
K02976 RP-S26e, RPS26; small subunit ribosomal protein S26e

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21362 lncRNA upstream 456 10537802 ~ 10538016 (+) True G19026
TU21346 lncRNA upstream 37657 10498633 ~ 10500815 (+) True G19011
TU21264 lncRNA upstream 50911 10485148 ~ 10487561 (+) True G18933
TU21256 lncRNA upstream 98101 10437326 ~ 10440371 (+) True G18929
TU21303 lncRNA upstream 101599 10436653 ~ 10436873 (+) True G18969
TU21365 lncRNA downstream 13498 10553344 ~ 10553661 (+) True G19029
TU21366 lncRNA downstream 13843 10553689 ~ 10553969 (+) True G19030
TU21344 lncRNA downstream 46110 10585956 ~ 10586294 (+) True G19009
TU21343 lncRNA downstream 58758 10598604 ~ 10598814 (+) True G19008
TU21332 lncRNA downstream 59180 10599026 ~ 10599251 (+) True G18997
CI01000001_10525795_10530510.mRNA mRNA upstream 7929 10523262 ~ 10530543 (+) True CI01000001_10525795_10530510
CI01000001_10420931_10426716.mRNA mRNA upstream 111325 10420318 ~ 10427147 (+) True CI01000001_10420931_10426716
CI01000001_10395420_10396473.mRNA mRNA upstream 141999 10394851 ~ 10396473 (+) False CI01000001_10395420_10396473
CI01000001_10328133_10329110.mRNA mRNA upstream 209362 10328040 ~ 10329110 (+) True CI01000001_10328133_10329110
CI01000001_10321783_10325266.mRNA mRNA upstream 213167 10321647 ~ 10325305 (+) True CI01000001_10321783_10325266
CI01000001_10573770_10582123.mRNA mRNA downstream 33924 10573770 ~ 10582238 (+) True CI01000001_10573770_10582123
CI01000001_10582439_10582802.mRNA mRNA downstream 42532 10582378 ~ 10582821 (+) True CI01000001_10582439_10582802
CI01000001_10590766_10595793.mRNA mRNA downstream 50590 10590436 ~ 10596238 (+) True CI01000001_10590766_10595793
CI01000001_10604980_10633286.mRNA mRNA downstream 64042 10603888 ~ 10633540 (+) True CI01000001_10604980_10633286
CI01000001_10688354_10691353.mRNA mRNA downstream 148016 10687862 ~ 10691409 (+) True CI01000001_10688354_10691353
TU21268 other upstream 62083 10474984 ~ 10476389 (+) True G18937
TU21193 other upstream 141767 10393557 ~ 10395953 (+) True G18875
TU21188 other upstream 257103 10271146 ~ 10281369 (+) True G18872
TU21190 other upstream 277758 10257112 ~ 10260714 (+) True G18873
TU21219 other upstream 296980 10239900 ~ 10241492 (+) True G18896
TU21382 other downstream 311078 10850924 ~ 10853983 (+) True G19039
TU21702 other downstream 961348 11501194 ~ 11558673 (+) True G19314
TU21803 other downstream 1141476 11681322 ~ 11681817 (+) True G19395
TU22314 other downstream 2973558 13513404 ~ 13513609 (+) True G19868

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00043122 True 436 mRNA 0.49 4 NC_007134.7 27675581 ~ 27677516 (+)
tiger barb (Puntius tetrazona) TU234236 False 558 TUCP 0.47 4 NC_056721.1 16007644 ~ 16008846 (+)