RNA id: CI01000001_10582439_10582802.mRNA



Basic Information


Item Value
RNA id CI01000001_10582439_10582802.mRNA
length 353
RNA type mRNA
GC content 0.41
exon number 2
gene id CI01000001_10582439_10582802
representative True

Chromosome Information


Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10582378 ~ 10582821 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATTTAAAAAGGGATGTCAAATCACTGGATGCCTTGAACTAACGCCTTATGAAAAATGAACAATGGCTTCAGAGGACTTTGACATGTGTCCAGACAGGAGAGCTATTTCAGAGGATGACATCACTGCCATGACCACGTTTCCTTTTCCTGGTGGTGGAATGAGAGTGTTGAGTTCTGTCCTGGAAGTCCATTATGATGGGGTTTGTCTGCTTCTAACTGAACCTGAGAAAAGGGATGAAAGTGGCACAAGTTGCACTGATCTTGGAGATTATATGTTCGGATTGAGAAAACATGGTGGGATTCTCGCTTGGAAAAACACTTTTTGGATAGTTTAGGTTTTAAAATGTATGTTTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU21366 lncRNA upstream 28409 10553689 ~ 10553969 (+) True G19030
TU21365 lncRNA upstream 28717 10553344 ~ 10553661 (+) True G19029
TU21362 lncRNA upstream 44362 10537802 ~ 10538016 (+) True G19026
TU21346 lncRNA upstream 81563 10498633 ~ 10500815 (+) True G19011
TU21264 lncRNA upstream 94817 10485148 ~ 10487561 (+) True G18933
TU21344 lncRNA downstream 3135 10585956 ~ 10586294 (+) True G19009
TU21343 lncRNA downstream 15783 10598604 ~ 10598814 (+) True G19008
TU21332 lncRNA downstream 16205 10599026 ~ 10599251 (+) True G18997
TU21384 lncRNA downstream 71748 10654569 ~ 10654922 (+) True G19041
TU21333 lncRNA downstream 72566 10655387 ~ 10657271 (+) True G18998
CI01000001_10573770_10582123.mRNA mRNA upstream 140 10573770 ~ 10582238 (+) True CI01000001_10573770_10582123
CI01000001_10538498_10539667.mRNA mRNA upstream 42676 10538388 ~ 10539702 (+) False CI01000001_10538498_10539667
CI01000001_10525795_10530510.mRNA mRNA upstream 51835 10523262 ~ 10530543 (+) True CI01000001_10525795_10530510
CI01000001_10420931_10426716.mRNA mRNA upstream 155231 10420318 ~ 10427147 (+) True CI01000001_10420931_10426716
CI01000001_10395420_10396473.mRNA mRNA upstream 185905 10394851 ~ 10396473 (+) False CI01000001_10395420_10396473
CI01000001_10590766_10595793.mRNA mRNA downstream 7615 10590436 ~ 10596238 (+) True CI01000001_10590766_10595793
CI01000001_10604980_10633286.mRNA mRNA downstream 21067 10603888 ~ 10633540 (+) True CI01000001_10604980_10633286
CI01000001_10688354_10691353.mRNA mRNA downstream 105041 10687862 ~ 10691409 (+) True CI01000001_10688354_10691353
CI01000001_10694664_10713151.mRNA mRNA downstream 111646 10694467 ~ 10714684 (+) True CI01000001_10694664_10713151
CI01000001_10715529_10716091.mRNA mRNA downstream 132293 10715114 ~ 10716910 (+) True CI01000001_10715529_10716091
TU21319 other upstream 42532 10538472 ~ 10539846 (+) True CI01000001_10538498_10539667
TU21318 other upstream 42628 10538472 ~ 10539750 (+) False CI01000001_10538498_10539667
TU21268 other upstream 105989 10474984 ~ 10476389 (+) True G18937
TU21193 other upstream 185673 10393557 ~ 10395953 (+) True G18875
TU21188 other upstream 301009 10271146 ~ 10281369 (+) True G18872
TU21382 other downstream 268103 10850924 ~ 10853983 (+) True G19039
TU21702 other downstream 918373 11501194 ~ 11558673 (+) True G19314
TU21803 other downstream 1098501 11681322 ~ 11681817 (+) True G19395
TU22314 other downstream 2930583 13513404 ~ 13513609 (+) True G19868

Expression Profile