RNA id: CI01000001_10715529_10716091.mRNA



Basic Information


Item Value
RNA id CI01000001_10715529_10716091.mRNA
length 1516
RNA type mRNA
GC content 0.44
exon number 2
gene id CI01000001_10715529_10716091
representative True

Chromosome Information


Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10715114 ~ 10716910 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GGATAAAAGGGGGAGTGGGAGCTGTATCCTGGAATAGCCAGCAAGTCAAGCTGCTAACTCCACCCCCTCACCCCCCTCCTCTCTCTCTCTCTCTCTCTCTCTCTGGCAGTCTTACAGTCTGTCATTTGAGCGGACAGTGAGAGCAGGAGGGAGGAAAAACAGGGAGACTGAGCTGTGCTTTTGCCTGCTGTTGACTCGTCTTCTTGCTTGTGCAGTGACAACCTGAGACTGGATATCCGGACGGTATATGATTCCCTAGCAGACTAGCTGGACTTTTTCCTCCTCTTGGGATTTGTTTTGAGGTTTTCCTTCACACCTCTTTGGAATTACCGCTACAGGGATATCCCCGGCGTGAACGCGTGTGATGTGCCATGCCCATGCCTGCTAATCTTGTGGTCAGTGACTGGGGTAGACCATGAAGGGGGGCCACCACCATCGGGGCTGCGCCTGCCACCACTTGTTTCGGAAAGTCCTGGCAAAGTGCGGCTGCTGTTATGCCCGGGTCAGAGGGGGATTCGTCCGTGCCTCTTTTTCTATTGGTGCTCGCGCTCAGCTGGAGCAACAGATGTCTGTCACTTCTCCTGGTTACGGCTTCCCCTCACACTTTTCATCTCACTCCCCCTCTCAAAGGCGTGCACACGATTATCGGGTGGCAAGAACGGCGTGTGTGCATGTGCATGTGTATGTCATGCATTAGATGCAGTGTGTTTGCGTGTGCGACAGGGTGCCATGTGTTAAGGGGGGTTTTTGGAGGAGCACGTGGGTGGATGAAACTCTGGTGGCTGCACAGAAACATTCCTTCCCCTATTTAACACTGACTAATACGCTTTTTCCTATCTTTTTTGTTTGTCTCTCAAGATTGTCAGCCACCAGCTGAGGTTTCTATTGTGATAGTTGATCAATAAAATTAAAATTCATCTTCATTTACTTACCTTCATGTCATTTCAAACCCTTCTTTTTTTTATCTGTACAATGAAAGTCAGGTGGGTTTAATGTTGTTTTGGATCCCATTAACTTTCATTGTATGGACAAAATAAATGTTTGAAACATTCTTCGAAATATCTCCAATACAGAAGAAAGCAAGTCATACAGGTTTGGAATGACATATTTACATTTTGGCGGAACTATTCCTTTAATGTTGCAGTAGTGAGTTCAACTTTGAGTAAAATATTGCATGTTAAATGGTAGCTCCAAAGCAAAATGTCTTGCAATTACATCCACACAACTTTTTTGTGCTATATCCCATCTGTTTTGTATAATTTATGTAAAATACACTGCTTTAAAGCTTTCTTCGTGTGCTCTTTTATCATCGTTTCGACTCTGCGGGGCTCTGGCATAGTTCAGATGCTTCTAGTTTAATCTCCAGTGCTTATGTAATGGATATTCTTCCTCTGAGCCAGGGTATGTTCTTTCTACCTTCACTTTAGATAATCTACAACATCATTCTGAAATAATGTTGTTACAAGACCAAAATTTCAGTGATTGTTACCAATACCAGTAAAATAATTTTACGCAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU21333 lncRNA upstream 57843 10655387 ~ 10657271 (+) True G18998
TU21384 lncRNA upstream 60192 10654569 ~ 10654922 (+) True G19041
TU21332 lncRNA upstream 115863 10599026 ~ 10599251 (+) True G18997
TU21343 lncRNA upstream 116300 10598604 ~ 10598814 (+) True G19008
TU21344 lncRNA upstream 128820 10585956 ~ 10586294 (+) True G19009
TU21423 lncRNA downstream 97480 10814390 ~ 10815702 (+) True G19080
TU21430 lncRNA downstream 157072 10873982 ~ 10874233 (+) True G19087
TU21431 lncRNA downstream 157760 10874670 ~ 10874871 (+) True G19088
TU21375 lncRNA downstream 175527 10892437 ~ 10896905 (+) True G19034
TU21493 lncRNA downstream 208618 10925528 ~ 10986466 (+) True G19130
CI01000001_10694664_10713151.mRNA mRNA upstream 430 10694467 ~ 10714684 (+) True CI01000001_10694664_10713151
CI01000001_10688354_10691353.mRNA mRNA upstream 23705 10687862 ~ 10691409 (+) True CI01000001_10688354_10691353
CI01000001_10604980_10633286.mRNA mRNA upstream 81574 10603888 ~ 10633540 (+) True CI01000001_10604980_10633286
CI01000001_10590766_10595793.mRNA mRNA upstream 118876 10590436 ~ 10596238 (+) True CI01000001_10590766_10595793
CI01000001_10582439_10582802.mRNA mRNA upstream 132293 10582378 ~ 10582821 (+) True CI01000001_10582439_10582802
CI01000001_10749174_10779222.mRNA mRNA downstream 32264 10749174 ~ 10779454 (+) True CI01000001_10749174_10779222
CI01000001_10807407_10818870.mRNA mRNA downstream 90410 10807320 ~ 10820053 (+) True CI01000001_10807407_10818870
CI01000001_10856786_10861403.mRNA mRNA downstream 139050 10855960 ~ 10862138 (+) True CI01000001_10856786_10861403
CI01000001_10968536_10981345.mRNA mRNA downstream 251434 10968344 ~ 10981787 (+) True CI01000001_10968536_10981345
CI01000001_10989337_10992917.mRNA mRNA downstream 272427 10989337 ~ 10992978 (+) True CI01000001_10989337_10992917
TU21319 other upstream 175268 10538472 ~ 10539846 (+) True CI01000001_10538498_10539667
TU21318 other upstream 175364 10538472 ~ 10539750 (+) False CI01000001_10538498_10539667
TU21268 other upstream 238725 10474984 ~ 10476389 (+) True G18937
TU21193 other upstream 318409 10393557 ~ 10395953 (+) True G18875
TU21188 other upstream 433745 10271146 ~ 10281369 (+) True G18872
TU21382 other downstream 134014 10850924 ~ 10853983 (+) True G19039
TU21702 other downstream 784284 11501194 ~ 11558673 (+) True G19314
TU21803 other downstream 964412 11681322 ~ 11681817 (+) True G19395
TU22314 other downstream 2796494 13513404 ~ 13513609 (+) True G19868

Expression Profile