RNA id: TCONS_00013842


Basic Information

Item Value
RNA id TCONS_00013842
length 717
lncRNA type antisense_over
GC content 0.47
exon number 4
gene id XLOC_006707
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 31102907 ~ 31122838 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGAACTGTTGAATACAGTCTGTTATCACATCCTCCCTcagtttattttgaatatttgtaatttgATAACGCTTAACTACAGAAACTCAAACGGGACATTTTGCCCCAGCACCTTGAAATGTAGGCTGAGCTGCATTCGCCATCACCAAGTATAAAGCCTTAGATTTTGCACGCAATTCTCAAGTCTCCTGAGGCTCCAGCAGACAAATGTTAATTTTGTACTCCTGCAAGGCCAAATTCAAGgTTGCTCTGTCCTCTTTCCGCTGTACCTGTGGTTTGGTTTCCTCCTCATCCTTGTAGAAGTAGAGGTGGTCAGTTCGGAGCACAAACCAGCGCAGTTGCCAGTTCTTCATGATGCTGCGCTGTTTCTTCAGCCAGCCGGCCTTCACTACCTGCTCTTGAAGGCTGGGGGACGATGGCCTGCTGGACCCACGGGACAGTTCCCCCATGACCATGCTCTTAGACCTCGCTgaaacaTAAAGGCAGTGTATAGCAGAAATGACCGGAGCACTGTGCATCTAAATGAAGGGCTACAAATACTGGCACTCTGATTCAATCACTGTAAGTAATGTAGGCCTCATCAGTGTTAATGTACACCTCACAGAGAGGAAGAGGGTGGGAGAAAAGCCCCTAAAATCATCCAGCCCCTTAAACAACATCATCCCCTAGGGACACACAGAATGACGTTTCTCCTTATTACCCATAAACCAAGTGGCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013841 lncRNA downstream 10507 31089586 ~ 31092400 (-) True XLOC_006706
TCONS_00012915 lncRNA downstream 41091 31059284 ~ 31061816 (-) True XLOC_006704
TCONS_00012914 lncRNA downstream 41874 31057365 ~ 31061033 (-) False XLOC_006704
TCONS_00012913 lncRNA downstream 42877 31052536 ~ 31060030 (-) False XLOC_006704
TCONS_00012912 lncRNA downstream 51751 31044802 ~ 31051156 (-) True XLOC_006703
TCONS_00012923 lncRNA upstream 37427 31160187 ~ 31166605 (-) False XLOC_006709
TCONS_00012935 lncRNA upstream 271951 31394711 ~ 31397088 (-) True XLOC_006715
TCONS_00013845 lncRNA upstream 677272 31800032 ~ 31800406 (-) True XLOC_006723
TCONS_00013846 lncRNA upstream 827397 31950157 ~ 31953845 (-) False XLOC_006727
TCONS_00013847 lncRNA upstream 827397 31950157 ~ 31955798 (-) True XLOC_006727
TCONS_00012910 mRNA downstream 77402 31024711 ~ 31025505 (-) True XLOC_006702
TCONS_00012909 mRNA downstream 84947 31015547 ~ 31017960 (-) True XLOC_006701
TCONS_00012907 mRNA downstream 94632 30985047 ~ 31008275 (-) False XLOC_006700
TCONS_00012908 mRNA downstream 106835 30985499 ~ 30996072 (-) True XLOC_006700
TCONS_00012905 mRNA downstream 389671 30707322 ~ 30713236 (-) True XLOC_006697
TCONS_00012918 mRNA upstream 24758 31147518 ~ 31166559 (-) False XLOC_006709
TCONS_00012919 mRNA upstream 25177 31147937 ~ 31166563 (-) False XLOC_006709
TCONS_00012920 mRNA upstream 25178 31147938 ~ 31164749 (-) False XLOC_006709
TCONS_00012922 mRNA upstream 25477 31148237 ~ 31167461 (-) False XLOC_006709
TCONS_00012921 mRNA upstream 25477 31148237 ~ 31167461 (-) False XLOC_006709
TCONS_00012916 other downstream 26960 31075833 ~ 31075947 (-) True XLOC_006705
TCONS_00012906 other downstream 230468 30855319 ~ 30872439 (-) True XLOC_006699
TCONS_00012900 other downstream 402448 30664819 ~ 30700459 (-) False XLOC_006695
TCONS_00012895 other downstream 470688 30632105 ~ 30632219 (-) True XLOC_006693
TCONS_00012879 other downstream 1595306 29506660 ~ 29507601 (-) False XLOC_006678
TCONS_00012917 other upstream 3689 31126449 ~ 31127046 (-) True XLOC_006708
TCONS_00012925 other upstream 70725 31193485 ~ 31205193 (-) True XLOC_006710
TCONS_00012930 other upstream 223835 31346595 ~ 31351772 (-) True XLOC_006712
TCONS_00012938 other upstream 301830 31424590 ~ 31440940 (-) False XLOC_006716
TCONS_00012942 other upstream 456688 31579448 ~ 31579564 (-) True XLOC_006718