RNA id: CI01000001_10968536_10981345.mRNA



Basic Information


Item Value
RNA id CI01000001_10968536_10981345.mRNA
length 1393
RNA type mRNA
GC content 0.44
exon number 4
gene id CI01000001_10968536_10981345
representative True

Chromosome Information


Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10968344 ~ 10981787 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATATAAATCTATTGTACAGCTCCAGATAAATACAGAGCATAAGTGACATGAGGGTGAGTAAACAATTACCAAATTTTCATTTTTGGGAACTATTCCTTTAAATGATTTGGCTGCAAGAGTGTGTGTGTGCTCCGACAGGTGTGCAGGTGTGCATGGAGGAAAGGGGGGACGTTCTGACTGGTTGGCCACAATGGAAACTCCACACTGGGCAGGCGGCAGTGAATGCACATCGCGGCGCTGCTGCTCGGGTTACTCACCTCTCCTCCAGCAGCCAACTCCGCTCTTTGTCTCAGTCCTGCCGATGAAAACACTGGGGACCAGGCGACATGCCACGGCTCCAGAGAGTCAAAGTGTGTCTGTATGTGTGCATTTGAGGCACTCTATGGTGAATGAGCAGTATTCTGAGGGGAGGGATCTGCAGGTCTTCTGCCGTCTTCGCTCAGAAGGCACACAATTAGACCAGCACCTGAGCAAACAGCTCATAATGAGGATGGACTCATGTGTGTGCCCTGATACACAAATGGGTAAACACACTGATACAGGGAATCATCTTGAGGATTTCAACATACCTGCTAAGTCATATTTCATTCTCCCTCTTAAAAGTACCAATTGCACAGAGAATTATGGTTTATTTAGAGAGCTATTTTTACATAGAGCCTTGGGGAATCACATCCCCAAACATACACACTTCTGTAGCGCCTCCAGACTGCAAACCAAGCCTCTCACGCAAGCAGCAAACAGGGCAAAGCAGGGACACAAACCTGGGACACGAACAAACCTGGAACTAGCATGCAAATTTAAACACCGTGTGCAGGACCAGATCAAAGATGCAGAGACATCAAGAGTCAGAGAGAGAAACAGAGCTTCCATGTTGAGATACTGCCCAGCTGCAGGGAAAGGTTCCATGTGCGAGGAGGACCAGGCCAAAAACATTTTAGGGACTCTGTGAAGGCTTCCCTGTCTGGCCAGAGGCCCATGGGTATATTGGAATATTGAGGTTCTATTTTTAATGTGTTTAACGAGAGACCAGAGCACAAGAGATTAAATCTGGACTCTGAGTTGGCCAGTTCAGCAGACACAGATACAGTATATCTAGGGATAGGGTGAAGCCCAGTTGTAAAATCTGTGTACTAACAGATCTTTCATCATAATCATCAATTCTCAACATGCTCCTCTGGTACTAAGAACAGGCCAAACGAACATTCTAGAGGAGAAAGGGTCATATATAAATTGTTCATGTTGTATATAAAAGGTTGTATATAAAGTGTATAGCAAACTAGAATTAACCCATTATCAGAATATTACATTTTAGTGGTTTAAAATCAGATGATTGACTTTAACATGGAATAACATTCGTAAGGAGCTGTCACATTTGTGAAATTTCAAGGGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU21375 lncRNA upstream 71439 10892437 ~ 10896905 (+) True G19034
TU21431 lncRNA upstream 93473 10874670 ~ 10874871 (+) True G19088
TU21430 lncRNA upstream 94111 10873982 ~ 10874233 (+) True G19087
TU21423 lncRNA upstream 152642 10814390 ~ 10815702 (+) True G19080
TU21333 lncRNA upstream 311073 10655387 ~ 10657271 (+) True G18998
TU21484 lncRNA downstream 89117 11070904 ~ 11126159 (+) True G19121
TU21596 lncRNA downstream 187506 11169293 ~ 11183770 (+) True G19226
TU21459 lncRNA downstream 273282 11255069 ~ 11304024 (+) True G19096
TU21471 lncRNA downstream 399787 11381574 ~ 11381987 (+) True G19108
TU21630 lncRNA downstream 405856 11387643 ~ 11387959 (+) True G19258
CI01000001_10856786_10861403.mRNA mRNA upstream 106206 10855960 ~ 10862138 (+) True CI01000001_10856786_10861403
CI01000001_10807407_10818870.mRNA mRNA upstream 148291 10807320 ~ 10820053 (+) True CI01000001_10807407_10818870
CI01000001_10749174_10779222.mRNA mRNA upstream 188890 10749174 ~ 10779454 (+) True CI01000001_10749174_10779222
CI01000001_10715529_10716091.mRNA mRNA upstream 251434 10715114 ~ 10716910 (+) True CI01000001_10715529_10716091
CI01000001_10694664_10713151.mRNA mRNA upstream 253660 10694467 ~ 10714684 (+) True CI01000001_10694664_10713151
CI01000001_10989337_10992917.mRNA mRNA downstream 7550 10989337 ~ 10992978 (+) True CI01000001_10989337_10992917
CI01000001_11019871_11028065.mRNA mRNA downstream 37692 11019479 ~ 11028524 (+) True CI01000001_11019871_11028065
CI01000001_11099313_11137500.mRNA mRNA downstream 117526 11099313 ~ 11138278 (+) True CI01000001_11099313_11137500
CI01000001_11138617_11139541.mRNA mRNA downstream 156498 11138285 ~ 11139673 (+) True CI01000001_11138617_11139541
CI01000001_11182552_11204143.mRNA mRNA downstream 200765 11182552 ~ 11204499 (+) True CI01000001_11182552_11204143
TU21382 other upstream 114361 10850924 ~ 10853983 (+) True G19039
TU21319 other upstream 428498 10538472 ~ 10539846 (+) True CI01000001_10538498_10539667
TU21318 other upstream 428594 10538472 ~ 10539750 (+) False CI01000001_10538498_10539667
TU21268 other upstream 491955 10474984 ~ 10476389 (+) True G18937
TU21193 other upstream 571639 10393557 ~ 10395953 (+) True G18875
TU21702 other downstream 519407 11501194 ~ 11558673 (+) True G19314
TU21803 other downstream 699535 11681322 ~ 11681817 (+) True G19395
TU22314 other downstream 2531617 13513404 ~ 13513609 (+) True G19868

Expression Profile