RNA id: CI01000001_11138617_11139541.mRNA



Basic Information


Item Value
RNA id CI01000001_11138617_11139541.mRNA
length 650
RNA type mRNA
GC content 0.42
exon number 2
gene id CI01000001_11138617_11139541
representative True

Chromosome Information


Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 11138285 ~ 11139673 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GCATAAAATGAGCCCACTGTGTCCTCTAGAGTTGTTTCAATGTATGCCTTACACATTTGCACTAACAGGAGCAAATATCATTTATATGTTAAGAAATTTACTGATGGAGGTCCATGAAAACTAACTTGACACATGCTGTGGGGTCCAAGTATTAAAAGCTCTATTCTTCATCCTGAGTTATGTATGAGGAATTCTGTCCAGTTATTGATCACCTGCATGAATCTCACATTTATTGCTATGGGATTTTCTTTACCGGCATTTTAGGACAGGCTGTTTAGCCTTTGTTCTTGCCCTCTTCCACTCTTTTTGCATGGGAGCTGGTGTGAAGTGTAATGAGTGTCTCAGACCATCTGGAGCTTCCAGAAATGTCCATGCTGGGCACCCGTGCTGTTAGGATTCAGTTCATCACGCCTGCTTTCTCCTCCTCACCCCGGATGGCAGGAGTCCACTTGTCTAGACCGACATCTCTCCACATAAAGTGCCCGATCAAAGGCTGGCCAGCAGGGGGAGTGCGGTGATCTTTTAGTTATTAAATTTGCAAAAAAAAAATTAATGTAAATATTAGTCCATTATGGTGACCTGAGTGCATTAGGTTTGTTTAAACTGCCTTTTCCGCATGCAAGTGCCTTGGTTTTTGTTATACCTCATAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU21484 lncRNA upstream 12126 11070904 ~ 11126159 (+) True G19121
TU21493 lncRNA upstream 151819 10925528 ~ 10986466 (+) True G19130
TU21375 lncRNA upstream 241380 10892437 ~ 10896905 (+) True G19034
TU21431 lncRNA upstream 263414 10874670 ~ 10874871 (+) True G19088
TU21430 lncRNA upstream 264052 10873982 ~ 10874233 (+) True G19087
TU21596 lncRNA downstream 29620 11169293 ~ 11183770 (+) True G19226
TU21459 lncRNA downstream 115396 11255069 ~ 11304024 (+) True G19096
TU21471 lncRNA downstream 241901 11381574 ~ 11381987 (+) True G19108
TU21630 lncRNA downstream 247970 11387643 ~ 11387959 (+) True G19258
TU21631 lncRNA downstream 249882 11389555 ~ 11389858 (+) True G19259
CI01000001_11099313_11137500.mRNA mRNA upstream 7 11099313 ~ 11138278 (+) True CI01000001_11099313_11137500
CI01000001_11019871_11028065.mRNA mRNA upstream 109761 11019479 ~ 11028524 (+) True CI01000001_11019871_11028065
CI01000001_10989337_10992917.mRNA mRNA upstream 145307 10989337 ~ 10992978 (+) True CI01000001_10989337_10992917
CI01000001_10968536_10981345.mRNA mRNA upstream 156498 10968344 ~ 10981787 (+) True CI01000001_10968536_10981345
CI01000001_10856786_10861403.mRNA mRNA upstream 276147 10855960 ~ 10862138 (+) True CI01000001_10856786_10861403
CI01000001_11182552_11204143.mRNA mRNA downstream 42879 11182552 ~ 11204499 (+) True CI01000001_11182552_11204143
CI01000001_11216246_11230227.mRNA mRNA downstream 76573 11216246 ~ 11230321 (+) True CI01000001_11216246_11230227
CI01000001_11232168_11238289.mRNA mRNA downstream 92495 11232168 ~ 11238655 (+) True CI01000001_11232168_11238289
CI01000001_11246797_11247315.mRNA mRNA downstream 106976 11246649 ~ 11247541 (+) True CI01000001_11246797_11247315
CI01000001_11265638_11283027.mRNA mRNA downstream 125965 11265638 ~ 11283236 (+) True CI01000001_11265638_11283027
TU21382 other upstream 284302 10850924 ~ 10853983 (+) True G19039
TU21319 other upstream 598439 10538472 ~ 10539846 (+) True CI01000001_10538498_10539667
TU21318 other upstream 598535 10538472 ~ 10539750 (+) False CI01000001_10538498_10539667
TU21268 other upstream 661896 10474984 ~ 10476389 (+) True G18937
TU21193 other upstream 741580 10393557 ~ 10395953 (+) True G18875
TU21702 other downstream 361521 11501194 ~ 11558673 (+) True G19314
TU21803 other downstream 541649 11681322 ~ 11681817 (+) True G19395
TU22314 other downstream 2373731 13513404 ~ 13513609 (+) True G19868

Expression Profile