RNA id: CI01000001_11431153_11431434.mRNA



Basic Information


Item Value
RNA id CI01000001_11431153_11431434.mRNA
length 1712
RNA type mRNA
GC content 0.41
exon number 1
gene id CI01000001_11431153_11431434
representative True

Chromosome Information


Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 11429876 ~ 11431587 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTATTTAAGGGCAGAATTCTCTCACTGCTAAGTCACCCAAATCTGATGCAAAGATTTAGCAAAGTTCACTTTTAATAGGTTTTCCAGGCTTAAAATCGAGCCCGCTCGTAACAGTAAGATGTTTATCATGCAGTAAATAAAGAATGGGAAACCTGCGGGACGTAAAATGGTCTGTGGAACGCTTTAGCTGGTAGTTAGACGCTGTGTTGAGATGAGCTATTTCTAACCATCCCATGAAGCTGTCAATACAAAAGCTGTTTTGATTCGAATGGATGCTTTAACAAGAAAATCTCACATTGTTTTTGAAGGGAAAATGTGTAAATCGAAATCTAAATGTAACTTTTTTCTGCATAATGAGCTTTTCAAGGGACTCAAGGTTATATTCTAGATGTGCCGTGCACTCTCTGGCCCCAGCACATGCTTTCTCAGTTACTGTATTTACACTCAACACTTCCTCTCTGAAACAATGAGCTGAGGAATTATGCACGCTCCGCGCTGCACCAGATGCATCTGAACGCCTCAGAAGTGCACATTTTTACCTTAGACAATTGCAAGGCCCGGGTTGAAGAGGTCACCCAGTTGAGGACGGCAATTTTGATCCCCCCCCCCAAAAAAAAAAAAAAAAAAAAAAAATCAGCTGCAAAAACTATTAGGAAGTGGAAACATAAATTCTGAAGTATTTTTTCAGAACACCTCGAACGGAAGATTGAGGTCATTTGGGTGCAACAGTAAAGGTCATTTACTGTTTACCCTGCTCAGTATTTCACGCTTTAACTAGTGATTTCCTTTGCATTGCAATCTCGCTTTTCCTTGTAGGAAATGACCCCTGAGAAGCGATCTCATTCCATTACCCACAATTTATGTGCCTTTTTCCCAGCATCTAAAATTAACACTTGCCAAGTGGCAAAAGCAAGTAAAATTTTTCTTTGGTCTGTAATGCAAGTAGTGTTTATATATATATATATATATATATATATATATATATATATATGTATATATTACAAACAGCAAACCTCAATGATTTGATGCGTCCAAACGTGTTTCGGTGAAATGCTATTATTTCAGGCCCTCGAAGACGCCTGTCAGTGCTGAATAATAAACGAACGGTGGGGATGATCACAGCTAAAGCTTGTTTTCTTTAAGAGGTCCTGTTTATTTTAATGCTGACAATATTTTTACTGGAAATAGTACAGAGCTGCAATTGCCATAATGGTTTTACTGTATAAGGAGAAAACCTTTGCGAAAAAGTCAAGAAACTATTCTAAACAGATTCAACAATGAGAGTGAGAGAGCTTCTCCGTTTTATCTGCTCGCACATCAAAGGCCCCACAAGCCCTGTTTCTTTTCAGAACCGTGAGGCGGAGGACGCCGGGAATGACAGAAAATCTGCCTTGAACGTGGCTCTCCGGGCCCTGCATGTCTCGTTTAATGCGGAGCTTCTGTTTATGTGCCGGAATGATATCATGCCCAATCAAGTGGTGTTTCAAATCCTAATAATGCCGTTGGAAGTGCATTATTTGTACGAACGTGTGCTGACTGCAATCAGCCCACCAGAGTGAGGAAGTGGCTGTTAATGACTGCTTAGATTGGCGTGTCCTGTTCTTCCCTCTCTCCCTCTCTCTCCCGTTCTGACAGGAAGAGTATGCATTGCTAAAGCTGGGACATGACATACTCCTTCTCACCTGACATCAACTGCAGCGATTGTTCTAGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU21631 lncRNA upstream 40018 11389555 ~ 11389858 (+) True G19259
TU21630 lncRNA upstream 41917 11387643 ~ 11387959 (+) True G19258
TU21471 lncRNA upstream 47889 11381574 ~ 11381987 (+) True G19108
TU21459 lncRNA upstream 125852 11255069 ~ 11304024 (+) True G19096
TU21596 lncRNA upstream 246106 11169293 ~ 11183770 (+) True G19226
TU21700 lncRNA downstream 68630 11500217 ~ 11500514 (+) True G19312
TU21742 lncRNA downstream 237377 11668964 ~ 11670995 (+) True G19349
TU21799 lncRNA downstream 249120 11680707 ~ 11680946 (+) True G19394
TU21750 lncRNA downstream 250970 11682557 ~ 11687675 (+) True G19351
TU21765 lncRNA downstream 258338 11689925 ~ 11690609 (+) True G19362
CI01000001_11359106_11376288.mRNA mRNA upstream 52991 11359106 ~ 11376885 (+) True CI01000001_11359106_11376288
CI01000001_11265638_11283027.mRNA mRNA upstream 146640 11265638 ~ 11283236 (+) True CI01000001_11265638_11283027
CI01000001_11246797_11247315.mRNA mRNA upstream 182335 11246649 ~ 11247541 (+) True CI01000001_11246797_11247315
CI01000001_11232168_11238289.mRNA mRNA upstream 191221 11232168 ~ 11238655 (+) True CI01000001_11232168_11238289
CI01000001_11216246_11230227.mRNA mRNA upstream 199555 11216246 ~ 11230321 (+) True CI01000001_11216246_11230227
CI01000001_11440491_11445508.mRNA mRNA downstream 8392 11439979 ~ 11445540 (+) True CI01000001_11440491_11445508
CI01000001_11656975_11660666.mRNA mRNA downstream 224442 11656029 ~ 11661866 (+) True CI01000001_11656975_11660666
CI01000001_11756218_11760009.mRNA mRNA downstream 324574 11756161 ~ 11761497 (+) True CI01000001_11756218_11760009
CI01000001_11809724_11812692.mRNA mRNA downstream 377840 11809427 ~ 11813444 (+) True CI01000001_11809724_11812692
CI01000001_11898621_11898914.mRNA mRNA downstream 466710 11898297 ~ 11900188 (+) True CI01000001_11898621_11898914
TU21382 other upstream 575893 10850924 ~ 10853983 (+) True G19039
TU21319 other upstream 890030 10538472 ~ 10539846 (+) True CI01000001_10538498_10539667
TU21318 other upstream 890126 10538472 ~ 10539750 (+) False CI01000001_10538498_10539667
TU21268 other upstream 953487 10474984 ~ 10476389 (+) True G18937
TU21193 other upstream 1033171 10393557 ~ 10395953 (+) True G18875
TU21702 other downstream 69607 11501194 ~ 11558673 (+) True G19314
TU21803 other downstream 249735 11681322 ~ 11681817 (+) True G19395
TU22314 other downstream 2081817 13513404 ~ 13513609 (+) True G19868

Expression Profile