RNA id: CI01000001_11649219_11650300.mRNA


Basic Information

Item Value
RNA id CI01000001_11649219_11650300.mRNA
length 504
RNA type mRNA
GC content 0.42
exon number 2
gene id CI01000001_11649219_11650300
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 11649062 ~ 11650300 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAACCAGTTGCCATCTAAAGACACGGTGCTACATATCTATAAACGGCGCATGGGCTTGACCAAGAGAGGTGGATATCAAAATGAGACGCTGTCAGTTAGCAGTGTGATTGTGGAACAGACTGACACATTCACCTGGTCAGAGACGAGCGACTTTGTGCAGCTTATCATTCCCACGTCCCACATTCAACAGAAAAAGACCCTCAACAACTTTAGTACGTTAATGGGTGTGTTGATATCCAGCCGAAGAGCAATCAACCATAACTTCAGGCGAGCAGGCTCAGAAGTTTGGAATGGTGGAAAGTCACCACTCCCGAATGAGTTTGAGCGAGAGAATGTAATCTTTTAGTTTTAAGTCGGTTTGAACAATCCGGATAAGCGCAAGTTGATTAGCCGTCGTACCTACAATGTTTGTGCACTGTGTAAACAATGAGTGACGTATACGCGTGAGAGATCACTTCCTTAAATACATTACATTTTTAAGAGTTTTAAAGCTTTTAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23012 lncRNA downstream 261725 11387124 ~ 11387337 (-) True CI01000001_11385404_11386042
TU23009 lncRNA downstream 265281 11383448 ~ 11383781 (-) False CI01000001_11385404_11386042
TU22784 lncRNA downstream 365711 11267587 ~ 11283351 (-) True G20276
TU22928 lncRNA downstream 422553 11223648 ~ 11226509 (-) True G20385
TU22918 lncRNA downstream 431673 11217021 ~ 11217389 (-) True G20378
TU23044 lncRNA upstream 13275 11663575 ~ 11663824 (-) True G20494
TU23046 lncRNA upstream 30960 11681260 ~ 11681753 (-) True G20496
TU23051 lncRNA upstream 183308 11833608 ~ 11833881 (-) True G20501
TU23143 lncRNA upstream 238212 11888512 ~ 11889125 (-) True G20588
TU23058 lncRNA upstream 240005 11890305 ~ 11892156 (-) True G20507
CI01000001_11472071_11477723.mRNA mRNA downstream 171288 11471970 ~ 11477774 (-) True CI01000001_11472071_11477723
CI01000001_11446246_11449035.mRNA mRNA downstream 199996 11445886 ~ 11449066 (-) True CI01000001_11446246_11449035
CI01000001_11397805_11428592.mRNA mRNA downstream 220399 11397396 ~ 11428663 (-) True CI01000001_11397805_11428592
CI01000001_11385404_11386042.mRNA mRNA downstream 260128 11383582 ~ 11388934 (-) False CI01000001_11385404_11386042
CI01000001_11288035_11293399.mRNA mRNA downstream 354979 11288028 ~ 11294083 (-) True CI01000001_11288035_11293399
CI01000001_11654628_11655345.mRNA mRNA upstream 4267 11654567 ~ 11655367 (-) True CI01000001_11654628_11655345
CI01000001_11665402_11666409.mRNA mRNA upstream 14819 11665119 ~ 11666949 (-) True CI01000001_11665402_11666409
CI01000001_11677994_11680279.mRNA mRNA upstream 27694 11677994 ~ 11680840 (-) True CI01000001_11677994_11680279
CI01000001_11685422_11713351.mRNA mRNA upstream 34672 11684972 ~ 11713486 (-) True CI01000001_11685422_11713351
CI01000001_11715436_11736738.mRNA mRNA upstream 64812 11715112 ~ 11736738 (-) True CI01000001_11715436_11736738
TU22832 other downstream 528232 11120152 ~ 11120830 (-) True G20315
TU22856 other downstream 534315 11110837 ~ 11114747 (-) True G20319
TU22729 other downstream 620285 11022127 ~ 11028777 (-) False G20230
TU22735 other downstream 784142 10863945 ~ 10863998 (-) True G20234
TU22623 other downstream 1109212 10539027 ~ 10539850 (-) True G20136
TU23052 other upstream 1223098 12873398 ~ 12879268 (-) True G20502
TU23070 other upstream 1270299 12920599 ~ 12924677 (-) False CI01000001_12921289_12924608
TU23068 other upstream 1270704 12921004 ~ 12924852 (-) False CI01000001_12921289_12924608
TU23069 other upstream 1270704 12921004 ~ 12924677 (-) False CI01000001_12921289_12924608
TU23110 other upstream 1691689 13341989 ~ 13348146 (-) True G20555

Expression Profile