RNA id: CI01000001_11756218_11760009.mRNA



Basic Information


Item Value
RNA id CI01000001_11756218_11760009.mRNA
length 1905
RNA type mRNA
GC content 0.40
exon number 4
gene id CI01000001_11756218_11760009
representative True

Chromosome Information


Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 11756161 ~ 11761497 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTATAAAAATACCCCAAACTGCATGAAAAACACACAAAAATATATCATTGTGAAACCATGCAGCACTCAGAACAAGGAAACGGAGAGCTACAGATGGTGAGTGATAAAGGAGACCAATGTAATAAGACATCGGCCAGCAACTTGACGGCTGTGTGCAAAGCTTTTACAGACAACTCCCGTGTCTGCGCTGGCGGTCCCCAAGGGTCTGCTGTCAGGATGACTCCATCCTTCTCATTAGCAGAGCTGAAACAGTCTAAAATAAGAGGAAAAGGTCACAATAACATTAGATTCAGTGCATTGTGGATGAGGCAAGAGGCAAAGACTCTGCAAGATCTCACTCTCAAGAGAGATGTGACCTTGTACGCCCTACGGACCCCTTTGTTTAACATGGGGTTAAGGCCTGCTATCGGTCAATAATGACTCTGTAAATGAAGAAAGAGTTTGGTATGACAAAAATGTCTCTCACACAGTCCAATGCATCTTCCTTCATGAGATTTGAAGCTTCATGAAGTTAAAGAGGACCTATTATGCAAAATTCACTTTTGCATGGTGTTCGGACAAAAATGAGTGTTGGCAGTGTGTGTACACAACCACCCTATAATGATAAAAATCCAACCACTCCTTTTATTTTTAATCCCCATAAATCATAAGCAGTGTCTCAGAACAAGCCATTTCCAGATCCCTGGGAGTGTGACGTCACAAAAGCCACAGGCCCCGCCCACAAATGTTGACAGACACTGCCGTTTTAACATAGAACTGCCCTAAGCGCGTTTACAGCAAGTTTACACAGTCCGCCATTGCTGCACTGACGAGAACGTCTCCCAAGCATTTTAGGTGTTCTGTAGCTGGATGGATTAATCCACATAGCTCTCTCCATTTACTCCCTAAATCTGAGCCGCTGAAGACGAGGTGGATTCATTTTGTTTTTGAAGAAAATACTCCCTCAACTCTACCGAAATTTATGTCTGCGCAAATCATTTCACACTGGACTGCTTTGTGAACAAATGTCAATACAAAGGGACAATACAGAACATACAGTCTCCAGAGTGATACTGGATACGGCAGTGATGAAGGTGAGAGCACTTTATTCCAGTTCATCGGAGTTGATTTATGGATATAAAGTTTACCAGTTTATTAAGCACCACCCAAAAAGGCATAATGTCTTTATATATTTGTTTACTGTTAGTTGTAACAAGTGTTTGTGTACTTCTATGTATGTTGATGATAATGCAAGGGAGAGAGAGAGAGTTTATGGATAATATTTTATTGCACACTTGCACTGTGTTTTATTAAGCTCTTACAGTGATTTTCTAGAGTGAAGATGCTTCATATTTTGTGTGAAGTACAATAAACGTTATAAATCTCATCTGTAAACTCGCTTGTAGTAATACAGTGGATAAAAACAAGAAGACAATATAAGTTATAACCGTAATTGAACTAAACTATACCTGTTCTATCTCCATGCAGCATATATTCGCAGTTTCCGACATTATAGCGCATCCTGACTGAATCCTGACAGGAGAACGAGCTCTTGAAGCTCCGCCCTCTTAGGCTGAGTGCAGCAGCTCATTTGCATTTAAAGGGCACACACTGAAACGGCGCGTTTTTGCGCAACCCCAAAAAGTGGCAATTTTAACATGCTCTAAAAAATGATCTATAGGGTATTTTGAGCTAAAATTTCACATACACACTCTGGGGACATCAAAGACTTATTTTACATCTTGTAAGTGGGGGCATAATAGGTCCCCTTTAAAACAAGGGCTGGGTAAAATTATTATTTGATTTTCCAAATAATCACAATCTTATTTTGAACCATTTTAATTGAGTCTTCAAAACCCAAGAGCCAGTGTTTACAGCAGCTTGGAAACCAAATGACTCTTATGAACCAGTTCATTTTAATGAATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU21765 lncRNA upstream 65552 11689925 ~ 11690609 (+) True G19362
TU21750 lncRNA upstream 68486 11682557 ~ 11687675 (+) True G19351
TU21799 lncRNA upstream 75215 11680707 ~ 11680946 (+) True G19394
TU21742 lncRNA upstream 85166 11668964 ~ 11670995 (+) True G19349
TU21700 lncRNA upstream 255647 11500217 ~ 11500514 (+) True G19312
TU21760 lncRNA downstream 33307 11794804 ~ 11797310 (+) True G19358
TU21754 lncRNA downstream 53017 11814514 ~ 11814714 (+) True G19353
TU21844 lncRNA downstream 69035 11830532 ~ 11831123 (+) True G19435
TU21847 lncRNA downstream 90857 11852354 ~ 11876252 (+) True G19438
TU21902 lncRNA downstream 125451 11886948 ~ 11887201 (+) True G19488
CI01000001_11656975_11660666.mRNA mRNA upstream 94295 11656029 ~ 11661866 (+) True CI01000001_11656975_11660666
CI01000001_11440491_11445508.mRNA mRNA upstream 310621 11439979 ~ 11445540 (+) True CI01000001_11440491_11445508
CI01000001_11431153_11431434.mRNA mRNA upstream 324574 11429876 ~ 11431587 (+) True CI01000001_11431153_11431434
CI01000001_11359106_11376288.mRNA mRNA upstream 379276 11359106 ~ 11376885 (+) True CI01000001_11359106_11376288
CI01000001_11265638_11283027.mRNA mRNA upstream 472925 11265638 ~ 11283236 (+) True CI01000001_11265638_11283027
CI01000001_11809724_11812692.mRNA mRNA downstream 47930 11809427 ~ 11813444 (+) True CI01000001_11809724_11812692
CI01000001_11898621_11898914.mRNA mRNA downstream 136800 11898297 ~ 11900188 (+) True CI01000001_11898621_11898914
CI01000001_11990189_11991073.mRNA mRNA downstream 226580 11988077 ~ 11991195 (+) True CI01000001_11990189_11991073
CI01000001_11994138_12003906.mRNA mRNA downstream 232641 11994138 ~ 12004100 (+) True CI01000001_11994138_12003906
CI01000001_12006266_12048809.mRNA mRNA downstream 244431 12005928 ~ 12049045 (+) True CI01000001_12006266_12048809
TU21803 other upstream 74344 11681322 ~ 11681817 (+) True G19395
TU21702 other upstream 197488 11501194 ~ 11558673 (+) True G19314
TU21382 other upstream 902178 10850924 ~ 10853983 (+) True G19039
TU21319 other upstream 1216315 10538472 ~ 10539846 (+) True CI01000001_10538498_10539667
TU21318 other upstream 1216411 10538472 ~ 10539750 (+) False CI01000001_10538498_10539667
TU22314 other downstream 1751907 13513404 ~ 13513609 (+) True G19868

Expression Profile