RNA id: TCONS_00012920


Basic Information

Item Value
RNA id TCONS_00012920
length 1618
RNA type mRNA
GC content 0.48
exon number 11
gene id XLOC_006709
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 31147518 ~ 31167461 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGCTTTGTCTGGATGCTTACACATCGACTTCACCATGAACAAAAATAAGCGAGAGAAAGAATTCTACAGTGTAGATGTGGGGGATTCGACATTCACAGTGTTGAAGCGCTATCAGAATCTAAGACCCATTGGCTCGGGTGCTCAGGGAATAGTCTGCTCAGCGTATGACAACAACCTTGAGCGAAACGTGGCTATAAAGAAACTCAGCCGGCCTTTTCAAAATCAAACTCATGCCAAACGTGCGTACAGAGAGCTGGTGCTCATGAAATGTGTCAACCATAAAAATATAATAGGCCTCTTAAATGTTTTTACACCGCAAAAAACATTAGAAGAATTCCAAGATGTTTACCTAGTAATGGAGCTGATGGATGCGAACCTCTGCCAAGTCATTCAGATGGAGCTGGACCACGAGCGGCTGTCCTATCTGCTGTACCAGATGCTGTGTGGAATAAAACACCTCCACGCGGCGGGGATCATCCACAGGGACCTGAAACCCAGTAACATCGTGGTAAAGTCAGACTGTACCCTGAAGATCCTGGATTTCGGTCTGGCGCGGACAGCAGCTACAGGTCTGCTGATGACACCATATGTGGTGACCCGTTACTACAGAGCCCCTGAAGTCATCCTGGGAATGGGATATCAAGCCAATGtGGATGTGTGGTCTGTCGGCTGTATCATGGCTGAAATGGTCAGAGGTAGTGTATTATTTCCGGGTTCAGATCATATTGATCAGTGGAATAAAGTAATAGAGCAGCTGGGAACGCCAACTCAGGAGTTCCTGTTGAAACTCAACCAGTCTGTGCGGACCTATGTGGAGAACAGGCCCCGGTACACTGGATATAGCTTTGAGAAGCTGTTTCCTGATGTCCTGTTCCCTGCTGATTCAGAACACAGCAAACTAAAAGCGAGTCAGGCGCGGGACCTGCTGTCTAAAATGCTGGTGATTGATGCATCAAAACGAATCTCGGTGGATGAGGCTTTGCAGCACCCCTACATTAACGTGTGGTACGACCCGGCTGAAGTGGAAGCGCCTTCTCCTCTGATCACAGACAAACAGCTCGATGAGAGGGAACACACAGTGGAAGAGTGGAAAGAACTGATCTATAAAGAAGTGCTGGATTGGGAAGAACGGATGAAGAACGGTGTTATTCGAGGTCAGCCCTCCCCCCTAGGTGCAGCAGTGATCAACGGCTCACCCCAGCCCTCATCCTCATCCTCCATCAACGACGTGTCCTCCATGTCCACAGAGCCCACCGTGGCCTCAGACACAGACAGCAGCTTAGAGGCCTCGGCGGGACCCCTGAGCTGCTGCAGATGACTATCACCCTCCCCTGGAGTCGCTCTCTGTGTGGCATGGTATCAGATCTAGGCCAGTCTAATACGTTCTTTCGGGTCTGGTTTGGCTTTATTTTGAGTTGCACTCTAGATGCTGTAAATCACTATACAGTTTGATCTTTCTAGCAGCAGCAGCCCTAACAGACCGATGATAGTGAGCTCcttaacaaaacaaacacttcTTTTATAAGCTACATGTAGAGTATTTTGTCATGTCGTCGTAGAGTGATTTTTGGAAGGTAATCTGTAAAGATTGAATTGTGAATATATTttctcagattt

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0007254 JNK cascade biological_process
GO:0006468 protein phosphorylation biological_process
GO:0010468 regulation of gene expression biological_process
GO:0016310 phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004705 JUN kinase activity molecular_function
GO:0004707 MAP kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080218-17 Predicted to enable JUN kinase activity. Predicted to be involved in JNK cascade. Predicted to act upstream of or within protein phosphorylation and rhythmic process. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in abdominal aortic aneurysm; colorectal adenoma; rectal benign neoplasm; and type 2 diabetes mellitus. Orthologous to human MAPK8 (mitogen-activated protein kinase 8).

Ensembl:

ensembl_id ENSDART00000049180

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013844 lncRNA downstream 25100 31108526 ~ 31122838 (-) True XLOC_006707
TCONS_00013842 lncRNA downstream 25178 31102907 ~ 31122760 (-) False XLOC_006707
TCONS_00013843 lncRNA downstream 25178 31105176 ~ 31122760 (-) False XLOC_006707
TCONS_00013841 lncRNA downstream 55538 31089586 ~ 31092400 (-) True XLOC_006706
TCONS_00012915 lncRNA downstream 86122 31059284 ~ 31061816 (-) True XLOC_006704
TCONS_00012935 lncRNA upstream 229962 31394711 ~ 31397088 (-) True XLOC_006715
TCONS_00013845 lncRNA upstream 635283 31800032 ~ 31800406 (-) True XLOC_006723
TCONS_00013846 lncRNA upstream 785408 31950157 ~ 31953845 (-) False XLOC_006727
TCONS_00013847 lncRNA upstream 785408 31950157 ~ 31955798 (-) True XLOC_006727
TCONS_00013489 lncRNA upstream 818312 31983061 ~ 31995753 (-) False XLOC_006728
TCONS_00012910 mRNA downstream 122433 31024711 ~ 31025505 (-) True XLOC_006702
TCONS_00012909 mRNA downstream 129978 31015547 ~ 31017960 (-) True XLOC_006701
TCONS_00012907 mRNA downstream 139663 30985047 ~ 31008275 (-) False XLOC_006700
TCONS_00012908 mRNA downstream 151866 30985499 ~ 30996072 (-) True XLOC_006700
TCONS_00012905 mRNA downstream 434702 30707322 ~ 30713236 (-) True XLOC_006697
TCONS_00012926 mRNA upstream 127951 31292700 ~ 31296358 (-) True XLOC_006711
TCONS_00012927 mRNA upstream 178577 31343326 ~ 31346392 (-) False XLOC_006712
TCONS_00012928 mRNA upstream 178577 31343326 ~ 31370184 (-) False XLOC_006712
TCONS_00012929 mRNA upstream 178767 31343516 ~ 31349284 (-) False XLOC_006712
TCONS_00012931 mRNA upstream 206787 31371536 ~ 31377299 (-) False XLOC_006713
TCONS_00012917 other downstream 20892 31126449 ~ 31127046 (-) True XLOC_006708
TCONS_00012916 other downstream 71991 31075833 ~ 31075947 (-) True XLOC_006705
TCONS_00012906 other downstream 275499 30855319 ~ 30872439 (-) True XLOC_006699
TCONS_00012900 other downstream 447479 30664819 ~ 30700459 (-) False XLOC_006695
TCONS_00012895 other downstream 515719 30632105 ~ 30632219 (-) True XLOC_006693
TCONS_00012925 other upstream 28736 31193485 ~ 31205193 (-) True XLOC_006710
TCONS_00012930 other upstream 181846 31346595 ~ 31351772 (-) True XLOC_006712
TCONS_00012938 other upstream 259841 31424590 ~ 31440940 (-) False XLOC_006716
TCONS_00012942 other upstream 414699 31579448 ~ 31579564 (-) True XLOC_006718
TCONS_00012944 other upstream 471983 31636732 ~ 31647006 (-) False XLOC_006720

Expression Profile

//