RNA id: CI01000001_12814416_12815426.mRNA


Basic Information

Item Value
RNA id CI01000001_12814416_12815426.mRNA
length 848
RNA type mRNA
GC content 0.49
exon number 4
gene id CI01000001_12814416_12815426
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 12814336 ~ 12815444 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATAAAAAGCGACTACAACAACATTTCCCGACATGCACTGAACAAGTTGCCATAGCGCCACGTTGGTTTACCAACAAATATGGCGCACAGCCCGTCTCGTGTCTTTGCTGCAGTTTCAACGACTGCTGGTGATGTTTACCGAGACGAAAACGAGTCGGTGTTCAATCGGGGCCGCAAGCAAACACCTTTACACACTCAAAGCAACGTAAGAGTGGTTCAGGTGACGGGCTGTGCGGAGTTATCGTGTCCTCCGGACCGCGCGACCGTTACAATCAGCGTCAAAAACAGTAAAGAAAATGTTAACGACGTGACTAACAGCGTTACGCGAAGACTGGAATACATACTACAGACTGCAAGACAACATGATGTCAAGGAGGAAAACATCACTGTGGCCAAGCATTTACAAAGAGAGGAGGAGCTCTTCCACATGCAAGCCGAGGTGCTTCTTGTGTTTTCAGACTTTGAGAAGATGCAGAGTGCACGCTCAGTTTTGATTGAAAAACTAGACAAAAGCGTGTGTGTTGGTGACCCTTACTACAGTCACAGTGCTGAAAGCCTCAATTTGTTAAGGCGGCGAGTATGTTTGGAAGCTGTGGACAACGCTCGGCTAAAAGCCAGTGAGGCGTGTGGCATTCTGGGACAAGCTCTGGGACGCCCGCTGCTTGTACGCGAGGAGGAATCACAAGAGTGGACCAGCGGCCAGCATGAAGTCACTGGCTCTCCTCTAACACTACATCAGAGGACTGGGGTTACATTAGTCTCTGCCTCGTCACGTGTGTTTGTGACCTTTGAATTGCGACCAAAGGACAGCAACAGGAGGAAATTTTGAAGTTTTTGTTTAGCAATA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22219 lncRNA upstream 3625 12799634 ~ 12810711 (+) True G19783
TU22187 lncRNA upstream 68028 12745990 ~ 12746308 (+) True G19756
TU22145 lncRNA upstream 236411 12577514 ~ 12577925 (+) True G19718
TU22144 lncRNA upstream 236917 12577205 ~ 12577419 (+) True G19717
TU22131 lncRNA upstream 258872 12555099 ~ 12555464 (+) True G19704
TU22228 lncRNA downstream 6162 12821606 ~ 12826051 (+) False G19792
TU22229 lncRNA downstream 6162 12821606 ~ 12826051 (+) True G19792
TU22235 lncRNA downstream 16464 12831908 ~ 12835161 (+) True G19796
TU22191 lncRNA downstream 37312 12852756 ~ 12878556 (+) True G19757
TU22205 lncRNA downstream 59366 12874810 ~ 12877091 (+) True G19769
CI01000001_12718151_12726821.mRNA mRNA upstream 87002 12717924 ~ 12727334 (+) True CI01000001_12718151_12726821
CI01000001_12657571_12666609.mRNA mRNA upstream 146957 12657571 ~ 12667379 (+) True CI01000001_12657571_12666609
CI01000001_12633655_12648702.mRNA mRNA upstream 165220 12633198 ~ 12649116 (+) True CI01000001_12633655_12648702
CI01000001_12602382_12613489.mRNA mRNA upstream 200398 12601961 ~ 12613938 (+) True CI01000001_12602382_12613489
CI01000001_12580225_12599311.mRNA mRNA upstream 214749 12579974 ~ 12599587 (+) True CI01000001_12580225_12599311
CI01000001_12873759_12874041.mRNA mRNA downstream 58315 12873759 ~ 12874089 (+) False CI01000001_12873759_12874041
CI01000001_12912442_12919516.mRNA mRNA downstream 96170 12911614 ~ 12919991 (+) True CI01000001_12912442_12919516
CI01000001_12926362_12928572.mRNA mRNA downstream 109970 12925414 ~ 12928579 (+) True CI01000001_12926362_12928572
CI01000001_12991367_12993048.mRNA mRNA downstream 175832 12991276 ~ 12993443 (+) True CI01000001_12991367_12993048
CI01000001_13002416_13005974.mRNA mRNA downstream 186770 13002214 ~ 13006033 (+) True CI01000001_13002416_13005974
TU21803 other upstream 1132519 11681322 ~ 11681817 (+) True G19395
TU21702 other upstream 1255663 11501194 ~ 11558673 (+) True G19314
TU21382 other upstream 1960353 10850924 ~ 10853983 (+) True G19039
TU21319 other upstream 2274490 10538472 ~ 10539846 (+) True CI01000001_10538498_10539667
TU21318 other upstream 2274586 10538472 ~ 10539750 (+) False CI01000001_10538498_10539667
TU22314 other downstream 697960 13513404 ~ 13513609 (+) True G19868

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00043213 False 1063 mRNA 0.46 4 NC_007134.7 31245395 ~ 31248952 (+)