RNA id: TCONS_00012921


Basic Information

Item Value
RNA id TCONS_00012921
length 2254
RNA type mRNA
GC content 0.46
exon number 12
gene id XLOC_006709
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 31147518 ~ 31167461 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctgatACTTAACGAATAGGGGACAAGGCAGGGGACAACAGTGTGCGAATCGAGGCAAATACAGGTTCAGCATGACAattgtttggattttttttaaatgttttttttaactgatttaCGGTAATACGTTTGTTAACATAGtatactttttcaaaaaatggCAATGCATTAGTACGGTTGAAgtaattttattctatttatttacaaatatgaggaaataaattaggaaattacccatggcaactttaatgtaatacagtttgctatatttactttTAGCCACAACTCTCAATCAAGCTTGAATTTTGGCCTTTCATAAAAATAGTtttactcttccagctgcaacccatctctgggaaacatccatacacactcgtacactacggacaatttagcctactcaattcacctgtactgcagcactgagggggaaaccagagcacccggaggaaacccacgcgaacacggggagaacatgcaaactccacacagaaacgccaacagacccagccgaggttcgaaccagcgaccttcttgctgtgaggcgacagcactacctactgcgccaccgctatttaaaatatatttaaaataaattttagctAATTCGTTTTTGATTACCTTAGGGTTGTAGCTTCTTGTAACAGCCTTGTTTACCCTAATGCCCTAATAAGAATGACTACAaactgaaaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagcggTATATCTATGAATAGACCGGCGTGATGGCACGGAAGCGCGTGGGGGTTTGGTGACGTAGAGCGCATGTCGTCCGCAGTGCACGCGAGGCCTGCTGCCAGTGGAAGAAAGCGCTTTCAATAAGGTTTGTAACAGTCTGCTTTGTCTGGATGCTTACACATCGACTTCACCATGAACAAAAATAAGCGAGAGAAAGAATTCTACAGTGTAGATGTGGGGGATTCGACATTCACAGTGTTGAAGCGCTATCAGAATCTAAGACCCATTGGCTCGGGTGCTCAGGGAATAGTCTGCTCAGCGTATGACAACAACCTTGAGCGAAACGTGGCTATAAAGAAACTCAGCCGGCCTTTTCAAAATCAAACTCATGCCAAACGTGCGTACAGAGAGCTGGTGCTCATGAAATGTGTCAACCATAAAAATATAATAGGCCTCTTAAATGTTTTTACACCGCAAAAAACATTAGAAGAATTCCAAGATGTTTACCTAGTAATGGAGCTGATGGATGCGAACCTCTGCCAAGTCATTCAGATGGAGCTGGACCACGAGCGGCTGTCCTATCTGCTGTACCAGATGCTGTGTGGAATAAAACACCTCCACGCGGCGGGGATCATCCACAGGGACCTGAAACCCAGTAACATCGTGGTAAAGTCAGACTGTACCCTGAAGATCCTGGATTTCGGTCTGGCGCGGACAGCAGCTACAGGTCTGCTGATGACACCATATGTGGTGACCCGTTACTACAGAGCCCCTGAAGTCATCCTGGGAATGGGATATCAAGCCAATGtGGATGTGTGGTCTGTCGGCTGTATCATGGCTGAAATGGTCAGAGGTAGTGTATTATTTCCGGGTTCAGATCATATTGATCAGTGGAATAAAGTAATAGAGCAGCTGGGAACGCCAACTCAGGAGTTCCTGTTGAAACTCAACCAGTCTGTGCGGACCTATGTGGAGAACAGGCCCCGGTACACTGGATATAGCTTTGAGAAGCTGTTTCCTGATGTCCTGTTCCCTGCTGATTCAGAACACAGCAAACTAAAAGCGAGTCAGGCGCGGGACCTGCTGTCTAAAATGCTGGTGATTGATGCATCAAAACGAATCTCGGTGGATGAGGCTTTGCAGCACCCCTACATTAACGTGTGGTACGACCCGGCTGAAGTGGAAGCGCCTTCTCCTCTGATCACAGACAAACAGCTCGATGAGAGGGAACACACAGTGGAAGAGTGGAAAGAACTGATCTATAAAGAAGTGCTGGATTGGGAAGAACGGATGAAGAACGGTGTTATTCGAGGTCAGCCCTCCCCCCTAGGTGCAGCAGTGATCAACGGCTCACCCCAGCCCTCATCCTCATCCTCCATCAACGACGTGTCCTCCATGTCCACAGAGCCCACCGTGGCCTCAGACACAGACAGCAGCTTAGAGGCCTCGGCGGGACCCCTGAGCTGCTGCAGATGA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0007254 JNK cascade biological_process
GO:0006468 protein phosphorylation biological_process
GO:0010468 regulation of gene expression biological_process
GO:0016310 phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004705 JUN kinase activity molecular_function
GO:0004707 MAP kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080218-17 Predicted to enable JUN kinase activity. Predicted to be involved in JNK cascade. Predicted to act upstream of or within protein phosphorylation and rhythmic process. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in abdominal aortic aneurysm; colorectal adenoma; rectal benign neoplasm; and type 2 diabetes mellitus. Orthologous to human MAPK8 (mitogen-activated protein kinase 8).

Ensembl:

ensembl_id ENSDART00000190640

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013844 lncRNA downstream 25399 31108526 ~ 31122838 (-) True XLOC_006707
TCONS_00013842 lncRNA downstream 25477 31102907 ~ 31122760 (-) False XLOC_006707
TCONS_00013843 lncRNA downstream 25477 31105176 ~ 31122760 (-) False XLOC_006707
TCONS_00013841 lncRNA downstream 55837 31089586 ~ 31092400 (-) True XLOC_006706
TCONS_00012915 lncRNA downstream 86421 31059284 ~ 31061816 (-) True XLOC_006704
TCONS_00012935 lncRNA upstream 227250 31394711 ~ 31397088 (-) True XLOC_006715
TCONS_00013845 lncRNA upstream 632571 31800032 ~ 31800406 (-) True XLOC_006723
TCONS_00013846 lncRNA upstream 782696 31950157 ~ 31953845 (-) False XLOC_006727
TCONS_00013847 lncRNA upstream 782696 31950157 ~ 31955798 (-) True XLOC_006727
TCONS_00013489 lncRNA upstream 815600 31983061 ~ 31995753 (-) False XLOC_006728
TCONS_00012910 mRNA downstream 122732 31024711 ~ 31025505 (-) True XLOC_006702
TCONS_00012909 mRNA downstream 130277 31015547 ~ 31017960 (-) True XLOC_006701
TCONS_00012907 mRNA downstream 139962 30985047 ~ 31008275 (-) False XLOC_006700
TCONS_00012908 mRNA downstream 152165 30985499 ~ 30996072 (-) True XLOC_006700
TCONS_00012905 mRNA downstream 435001 30707322 ~ 30713236 (-) True XLOC_006697
TCONS_00012926 mRNA upstream 125239 31292700 ~ 31296358 (-) True XLOC_006711
TCONS_00012927 mRNA upstream 175865 31343326 ~ 31346392 (-) False XLOC_006712
TCONS_00012928 mRNA upstream 175865 31343326 ~ 31370184 (-) False XLOC_006712
TCONS_00012929 mRNA upstream 176055 31343516 ~ 31349284 (-) False XLOC_006712
TCONS_00012931 mRNA upstream 204075 31371536 ~ 31377299 (-) False XLOC_006713
TCONS_00012917 other downstream 21191 31126449 ~ 31127046 (-) True XLOC_006708
TCONS_00012916 other downstream 72290 31075833 ~ 31075947 (-) True XLOC_006705
TCONS_00012906 other downstream 275798 30855319 ~ 30872439 (-) True XLOC_006699
TCONS_00012900 other downstream 447778 30664819 ~ 30700459 (-) False XLOC_006695
TCONS_00012895 other downstream 516018 30632105 ~ 30632219 (-) True XLOC_006693
TCONS_00012925 other upstream 26024 31193485 ~ 31205193 (-) True XLOC_006710
TCONS_00012930 other upstream 179134 31346595 ~ 31351772 (-) True XLOC_006712
TCONS_00012938 other upstream 257129 31424590 ~ 31440940 (-) False XLOC_006716
TCONS_00012942 other upstream 411987 31579448 ~ 31579564 (-) True XLOC_006718
TCONS_00012944 other upstream 469271 31636732 ~ 31647006 (-) False XLOC_006720

Expression Profile

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