RNA id: TCONS_00012935


Basic Information

Item Value
RNA id TCONS_00012935
length 682
lncRNA type retained_intron
GC content 0.42
exon number 2
gene id XLOC_006715
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 31393192 ~ 31397987 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGCAGTACAGGACGTGATTTTATTCACGTGCTGAATTTCTCAATCAGGATCCATAAAATGAATTTCTAACTAATTTTCAGCTAATGTTATgaaatttaatacaaatattgTACTAAAAAttgaaaacacattaaatataatgtgttatatattaataaaatataacaccCCGCTCTTCCTCAAATGTCATAATGGGTctataatgtaaaaaatgtgtgttttgcAGATGCAGGGTTTGAGTTTGACATTTGTTACACCTCTGTGCTGAAGAGGGCCATCCGGACACTGTGGATTGTTCTGGACAGTATTGATCAGATGTGGCTGCCTGTGCACAGGACCTGGCGGCTGAATGAACGCCATTACGGTGGTCTCACTGGGTTAAACAAGGCCGAAACTGCAGCCAAGCATGGTGAAGCCCAGGTTAAAATTTGGAGGCGCTCCTATGACATTCCACCACCCAGTATGGATGAAGATCATGACTTTTACAGCATCATCAGCAAGGACCGACGTTATGGTGATCTGACTGAGGACCAGCTGCCTTCTTGTGAGAGTCTGAAGGACACTATTGCACGTGCTCTGCCTTTCTGGAATGATGAAATTGTGCCTCAAATCAAGGAGGGAAAGCGGGTGTTGATTGCCGCTCATGGAAACAGTTTGAGAGGCATTGTGAAGCACTTAGAA

Function

GO:

id name namespace
GO:0006096 glycolytic process biological_process
GO:0004619 phosphoglycerate mutase activity molecular_function
GO:0016853 isomerase activity molecular_function
GO:0016868 intramolecular transferase activity, phosphotransferases molecular_function
GO:0004082 bisphosphoglycerate mutase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1827 Predicted to enable bisphosphoglycerate mutase activity; hydrolase activity; and phosphoglycerate mutase activity. Predicted to act upstream of or within glycolytic process. Orthologous to several human genes including PGAM1 (phosphoglycerate mutase 1).

Ensembl:

ensembl_id ENSDART00000145300

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012923 lncRNA downstream 228106 31160187 ~ 31166605 (-) False XLOC_006709
TCONS_00013844 lncRNA downstream 271873 31108526 ~ 31122838 (-) True XLOC_006707
TCONS_00013842 lncRNA downstream 271951 31102907 ~ 31122760 (-) False XLOC_006707
TCONS_00013843 lncRNA downstream 271951 31105176 ~ 31122760 (-) False XLOC_006707
TCONS_00013841 lncRNA downstream 302311 31089586 ~ 31092400 (-) True XLOC_006706
TCONS_00013845 lncRNA upstream 402944 31800032 ~ 31800406 (-) True XLOC_006723
TCONS_00013846 lncRNA upstream 553069 31950157 ~ 31953845 (-) False XLOC_006727
TCONS_00013847 lncRNA upstream 553069 31950157 ~ 31955798 (-) True XLOC_006727
TCONS_00013489 lncRNA upstream 585973 31983061 ~ 31995753 (-) False XLOC_006728
TCONS_00012957 lncRNA upstream 585973 31983061 ~ 31995905 (-) False XLOC_006728
TCONS_00012933 mRNA downstream 5050 31379784 ~ 31389661 (-) True XLOC_006714
TCONS_00012932 mRNA downstream 16028 31372492 ~ 31378683 (-) True XLOC_006713
TCONS_00012931 mRNA downstream 17412 31371536 ~ 31377299 (-) False XLOC_006713
TCONS_00012928 mRNA downstream 24527 31343326 ~ 31370184 (-) False XLOC_006712
TCONS_00012929 mRNA downstream 45427 31343516 ~ 31349284 (-) False XLOC_006712
TCONS_00012936 mRNA upstream 27498 31424586 ~ 31435137 (-) False XLOC_006716
TCONS_00012937 mRNA upstream 27499 31424587 ~ 31441042 (-) False XLOC_006716
TCONS_00012939 mRNA upstream 27506 31424594 ~ 31452516 (-) False XLOC_006716
TCONS_00012940 mRNA upstream 27506 31424594 ~ 31470439 (-) True XLOC_006716
TCONS_00012941 mRNA upstream 139621 31536709 ~ 31544365 (-) True XLOC_006717
TCONS_00012930 other downstream 42939 31346595 ~ 31351772 (-) True XLOC_006712
TCONS_00012925 other downstream 189518 31193485 ~ 31205193 (-) True XLOC_006710
TCONS_00012917 other downstream 267665 31126449 ~ 31127046 (-) True XLOC_006708
TCONS_00012916 other downstream 318764 31075833 ~ 31075947 (-) True XLOC_006705
TCONS_00012906 other downstream 522272 30855319 ~ 30872439 (-) True XLOC_006699
TCONS_00012938 other upstream 27502 31424590 ~ 31440940 (-) False XLOC_006716
TCONS_00012942 other upstream 182360 31579448 ~ 31579564 (-) True XLOC_006718
TCONS_00012944 other upstream 239644 31636732 ~ 31647006 (-) False XLOC_006720
TCONS_00012947 other upstream 297843 31694931 ~ 31695047 (-) True XLOC_006722
TCONS_00012961 other upstream 1191464 32588552 ~ 32595220 (-) False XLOC_006734

Expression Profile

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