RNA id: TU14797


Basic Information

Item Value
RNA id TU14797
length 249
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G13286
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 952745 ~ 952993 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATACTGCTTAATGCAGAAAATGCATATCTTAAAGGGATAGTAAATGTGGGTTTGGAATGACATAGGGATGAGTAAATATAAATAATGACATCATTTTCATTTTTGGGTGAATAATTCCTTCGATATGCTGATTACTGTTTATTATTCATCCAATCCTGACATATTTAAACTGTCCATCAGGTAAAATCACACTCCACGTTTGTCTTGCAAAACAACACAAACTCTTTTTAGCCAAAAATATTAGCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14777 lncRNA downstream 31260 921263 ~ 921485 (-) True G13266
TU14776 lncRNA downstream 31600 920915 ~ 921145 (-) True G13265
TU14775 lncRNA downstream 33225 919239 ~ 919520 (-) True G13264
TU14773 lncRNA downstream 36298 916248 ~ 916447 (-) True G13262
TU14730 lncRNA downstream 81290 870862 ~ 871455 (-) True CI01000001_00872245_00878013
TU14804 lncRNA upstream 29930 982923 ~ 983336 (-) True G13293
TU14842 lncRNA upstream 79291 1032284 ~ 1033040 (-) True G13325
TU14847 lncRNA upstream 90668 1043661 ~ 1045223 (-) True G13330
TU14894 lncRNA upstream 133810 1086803 ~ 1115769 (-) True G13370
TU14895 lncRNA upstream 139523 1092516 ~ 1093860 (-) False G13371
CI01000001_00925612_00928679.mRNA mRNA downstream 23796 925440 ~ 928949 (-) True CI01000001_00925612_00928679
CI01000001_00872245_00878013.mRNA mRNA downstream 74732 870880 ~ 878013 (-) False CI01000001_00872245_00878013
CI01000001_00839822_00841040.mRNA mRNA downstream 110324 839630 ~ 842421 (-) True CI01000001_00839822_00841040
CI01000001_00808831_00814314.mRNA mRNA downstream 138104 807938 ~ 814641 (-) True CI01000001_00808831_00814314
CI01000001_00754687_00806154.mRNA mRNA downstream 146203 754565 ~ 806542 (-) True CI01000001_00754687_00806154
CI01000001_01030701_01030988.mRNA mRNA upstream 77261 1030254 ~ 1031164 (-) True CI01000001_01030701_01030988
CI01000001_01033836_01034518.mRNA mRNA upstream 80343 1033336 ~ 1034675 (-) False CI01000001_01033836_01034518
CI01000001_01056812_01066005.mRNA mRNA upstream 103459 1056452 ~ 1066123 (-) True CI01000001_01056812_01066005
CI01000001_01068423_01079855.mRNA mRNA upstream 114647 1067640 ~ 1080617 (-) True CI01000001_01068423_01079855
CI01000001_01158947_01164142.mRNA mRNA upstream 205405 1158398 ~ 1165151 (-) True CI01000001_01158947_01164142
TU14337 other downstream 555612 367242 ~ 397133 (-) True G12898
TU14333 other downstream 695228 257372 ~ 257517 (-) True G12894
TU14263 other downstream 817820 129502 ~ 134925 (-) True G12848
TU14286 other downstream 827288 122814 ~ 125457 (-) False CI01000001_00124107_00131285
TU15779 other upstream 810676 1763669 ~ 1767458 (-) False G14104
TU15917 other upstream 1041217 1994210 ~ 1994898 (-) True G14219
TU15926 other upstream 1102981 2055974 ~ 2056478 (-) True G14228
TU15886 other upstream 1306396 2262344 ~ 2297212 (-) True G14188
TU17347 other upstream 3439321 4392314 ~ 4399515 (-) True CI01000001_04395469_04399381

Expression Profile