RNA id: TU14887



Basic Information


Item Value
RNA id TU14887
length 1834
lncRNA type read_through
GC content 0.36
exon number 3
gene id G13364
representative True

Chromosome Information


Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 1186160 ~ 1215510 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TGAGATCTGGATTCTCCAAGGTTCAGCCACCAAAGCCTCAAACTCCATTTATTTATCTGATATTTTATTAGCGGGGTCAGGTCACACTCACACGCTCTCTTTAATTAGGCCAGTGCCATCGCTCCAGCAGGGACCAGACCAACATCTGATTATGCAGATGAAGAAATCAACAGCTGGAATTCAACACTCACTATTTCTAAGCCAATTAGCACAGTTCTGCCACCATGTAGTGACTATGTTTACTCTATAATGATGCAATTAGAGGGAGTAATAAATATACTTCTTACTTAACAGAATACACCATGTATTTGATAAACAAATCATGCAGGTTTGGAACAACTTGAGGGTGAGAAAATTATGACAGAATTTTCATTTTTGGTTGAACTATCCCTTTAAGTATGAAATAACAGCTGTTAGTAAAATGAAATGATATAATCAAATACAGACCTATGGTAATTATAGCTTAAAATTTCATAATTAAAATACTTTTAAATCTGAGTAAAAGCAAACAGGATGACTTACGGTGTCTGCTGATCAATGTAATAGGATCTGTATGCTTGTCACTAGGTGGCGATAGTGAAGCTTAAAAAGCAAGGAAAGTAGAAGAAGAGAGGTACTAGTGATGATTCTAGAGGGAGGTGCTAATTGGCTGTTTCATTGTAGGGGGCATAATTTGTAGTAGGGGGCTTGATTTGTAGTAGCGGTGTGATTTGTAGTAGGGGCGTAATTTGTAGTAGCGGTGTGATTTGTAGTAGGGGGCGTGATTTGTAGTAGCGGTGTGATTTGTAGTAGGGGGCGTGATTTGTAGTAGGGGGTGTGATTTGTTGTAGGGGGCGTGATTTGTAGTGGGGGGCGTGATTTGTAGTAGCGGTGTGATTTGTAGTAGGGGGCGTAATTTGTAGTAGTGGTGTGATTTGTAGTAGGGGGCGTGATTTGTAGTAGGGGGTGTGATTTGTTGTAGGGGGCGTGATTTGTAGTGGGGGGCGTGATTTGTAGTAGCGGTGTGATTTGTAGTAGGGGGCGTAATTTGTAGTAGTGGTGTGATTTGTAGTAGGGGGCGTGATTTGTAGTAGGGGGCGTGGTTTGCAGTACTGCAGGATGCAATCAGACACATTTGGAGGCATGCGCGTATCCTTTAAGTCCAACGGACTGTAAGGTGTCGTCCCATTTGTCATATTAGGTTTCAGAAGAGTGCTCGCGAGCGCCCCCTTTGTGGTCGATATGCACCCTCGATGCACACTGAAGCGAGCTTTGCAGTAGACTTTTACCCGTCAGTCAAAGTGGCGTAACATCACGAAAGTGCAGACTCCTAGGAAGACCGTGAGTAGAGTGCCATTTGGGACAGGGCCCTAATAGTTCCGTACAAATCAAAATTATTTATTTATACCTTATATCAATCTCAACATTTGGACACCATATATTACATATTGGTTATTTTTGTTCGACCCAGTTTTGTAAAATTTCCTCTATAAATACCTAACAGATTACAATAACTTTTCAATTATTGTCTTTTTTTTTTTTTTTTTTTTTTTGCTTGGCCGTCCAGTTCTCACCAGGGGAGACTAAAGGAAATTAATCTATTTACATGTTCTTTCATGTTTTTTTGTTATTTCTTATTTTCCGAACACATCACTTGCTATTAGAACATTTATATAATTATGTTATACAATTATGCAATATACAATGTACATCCAACTCTCTGCTGCCGTCACATGTGTTTTATGATTTTCTTCCTAATTTTCTCTACATTTGTAAAGAGTATGGGCCTAATTCAGAATTCAGACTATATCTATGAATCTTTCTCCTTTGTTGCATTTATGTCTATTTAACCGAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU14894 lncRNA downstream 70391 1086803 ~ 1115769 (-) True G13370
TU14895 lncRNA downstream 92300 1092516 ~ 1093860 (-) False G13371
TU14896 lncRNA downstream 92300 1092516 ~ 1093860 (-) True G13371
TU14847 lncRNA downstream 140937 1043661 ~ 1045223 (-) True G13330
TU14842 lncRNA downstream 151240 1032284 ~ 1033040 (-) True G13325
TU14934 lncRNA upstream 36615 1252125 ~ 1252348 (-) True G13409
TU14935 lncRNA upstream 37485 1252995 ~ 1253293 (-) True G13410
TU14940 lncRNA upstream 43014 1258524 ~ 1258893 (-) True G13415
TU15212 lncRNA upstream 195377 1410887 ~ 1411156 (-) True G13618
TU15213 lncRNA upstream 195934 1411444 ~ 1411651 (-) True G13619
CI01000001_01158947_01164142.mRNA mRNA downstream 21009 1158398 ~ 1165151 (-) True CI01000001_01158947_01164142
CI01000001_01068423_01079855.mRNA mRNA downstream 105543 1067640 ~ 1080617 (-) True CI01000001_01068423_01079855
CI01000001_01056812_01066005.mRNA mRNA downstream 120037 1056452 ~ 1066123 (-) True CI01000001_01056812_01066005
CI01000001_01033836_01034518.mRNA mRNA downstream 151485 1033336 ~ 1034675 (-) False CI01000001_01033836_01034518
CI01000001_01030701_01030988.mRNA mRNA downstream 154996 1030254 ~ 1031164 (-) True CI01000001_01030701_01030988
CI01000001_01293807_01304836.mRNA mRNA upstream 78188 1293698 ~ 1304836 (-) True CI01000001_01293807_01304836
CI01000001_01313263_01351961.mRNA mRNA upstream 97177 1312687 ~ 1352235 (-) True CI01000001_01313263_01351961
CI01000001_01368611_01369774.mRNA mRNA upstream 152895 1368405 ~ 1369799 (-) True CI01000001_01368611_01369774
CI01000001_01377825_01378304.mRNA mRNA upstream 161282 1376792 ~ 1378304 (-) True CI01000001_01377825_01378304
CI01000001_01421483_01453330.mRNA mRNA upstream 205420 1420930 ~ 1453330 (-) True CI01000001_01421483_01453330
TU14337 other downstream 789027 367242 ~ 397133 (-) True G12898
TU14333 other downstream 928643 257372 ~ 257517 (-) True G12894
TU14263 other downstream 1051235 129502 ~ 134925 (-) True G12848
TU14286 other downstream 1060703 122814 ~ 125457 (-) False CI01000001_00124107_00131285
TU15779 other upstream 548159 1763669 ~ 1767458 (-) False G14104
TU15917 other upstream 778700 1994210 ~ 1994898 (-) True G14219
TU15926 other upstream 840464 2055974 ~ 2056478 (-) True G14228
TU15886 other upstream 1043879 2262344 ~ 2297212 (-) True G14188
TU17347 other upstream 3176804 4392314 ~ 4399515 (-) True CI01000001_04395469_04399381

Expression Profile