RNA id: TU14880


Basic Information

Item Value
RNA id TU14880
length 1129
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G13361
representative False

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 1188474 ~ 1234796 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTGAACAGGAGTGTACATAATATAAATTATAATGTGCACAAAACTTCAAAATTCATCTCATTAACCACCGTTCATTTATATCAACACAAGGCACCAGAGCCCAAGAAGGAGACACCAGCTCCACCTCCTGTGGCAGAAGCCGCTCCAGCCGTGAAGGCCAAAGAGGAGCCAAAACCGGCCGCGCCAGCACCACAAACGGCCCCGGACAACAAATCAGTCGGAAGCACAGACGCCTCGCCCAACATGCCACGAAAGCTGGAGAAGAGGAATTCCCTCCAGCTGTTCTTCAAAAACCTGGGCCAAAAACGCCATTCTGATGCCGGAGTGCAAACGGACCCTGTGGCACCCGAGAAGTCCAAATAAAGCCCCGCCTTTGTTTTGATCGCTCATCTTTGCCAAAACGATTGTGCATATGCAATAGGCCTACATATAAATCACCCTCAGTTTCATTTATTTGGTTATGAGGTTGACTCTAAATCTGAAATCATGCCATGAATCATGGCTGAACCCCCATGCATTTAAAGAGAGCGGAAGTAAGTGCAACGATTCCCTGTTAAGCAAGTGCTACATGTGTTTTTGACAGGAGGGAGGAACGTCTATTGTTTTCCCACAGAGAAATGTGTCAGAGTTAAGTGATGTCATAAGATGGAAAAGTGAAGGTGAAAATGTAATCCCATCTAATATAAACTCCCTTTTCTTTATTTTCTGTGCATGTTAAAATGTAACGGTATGTAAAAAATTTTAACTAACACTACTCATCTTACGTTGCATTGCGCATTAAAACGGTTGCATCACGTTAAGATGCCTTTTCACCGGGACAAAGTAAATAACATGCGAGTTTGCGCATGTAAAGTATTTAGTATTACATAAAGTATTTATTTATGTAATCATACACTATCTGGTTGTAAAAACAATGACCCATCGTCTGCTTAATTCAATCGGCGTTCTCACTGAAACTGCAATTACATTAAAATGCAAAACTTCTGAATCGTTTTAGGCCCTGTCCCAAATGGCACACTTCATATGCACTTACGGTCTAGTGGACTTAAAATGGCCGCCGCATGGAGAAGGGTCTGTCTGCGTCCTGCAATACTACAAACCATGCCCTACAAGTTACGCCTCCGACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14894 lncRNA downstream 72705 1086803 ~ 1115769 (-) True G13370
TU14895 lncRNA downstream 94614 1092516 ~ 1093860 (-) False G13371
TU14896 lncRNA downstream 94614 1092516 ~ 1093860 (-) True G13371
TU14847 lncRNA downstream 143251 1043661 ~ 1045223 (-) True G13330
TU14842 lncRNA downstream 153554 1032284 ~ 1033040 (-) True G13325
TU14934 lncRNA upstream 61706 1252125 ~ 1252348 (-) True G13409
TU14935 lncRNA upstream 62576 1252995 ~ 1253293 (-) True G13410
TU14940 lncRNA upstream 68105 1258524 ~ 1258893 (-) True G13415
TU15212 lncRNA upstream 220468 1410887 ~ 1411156 (-) True G13618
TU15213 lncRNA upstream 221025 1411444 ~ 1411651 (-) True G13619
CI01000001_01158947_01164142.mRNA mRNA downstream 23323 1158398 ~ 1165151 (-) True CI01000001_01158947_01164142
CI01000001_01068423_01079855.mRNA mRNA downstream 107857 1067640 ~ 1080617 (-) True CI01000001_01068423_01079855
CI01000001_01056812_01066005.mRNA mRNA downstream 122351 1056452 ~ 1066123 (-) True CI01000001_01056812_01066005
CI01000001_01033836_01034518.mRNA mRNA downstream 153799 1033336 ~ 1034675 (-) False CI01000001_01033836_01034518
CI01000001_01030701_01030988.mRNA mRNA downstream 157310 1030254 ~ 1031164 (-) True CI01000001_01030701_01030988
CI01000001_01199556_01205086.mRNA mRNA upstream 9079 1199498 ~ 1205086 (-) True CI01000001_01199556_01205086
CI01000001_01293807_01304836.mRNA mRNA upstream 103279 1293698 ~ 1304836 (-) True CI01000001_01293807_01304836
CI01000001_01313263_01351961.mRNA mRNA upstream 122268 1312687 ~ 1352235 (-) True CI01000001_01313263_01351961
CI01000001_01368611_01369774.mRNA mRNA upstream 177986 1368405 ~ 1369799 (-) True CI01000001_01368611_01369774
CI01000001_01377825_01378304.mRNA mRNA upstream 186373 1376792 ~ 1378304 (-) True CI01000001_01377825_01378304
TU14337 other downstream 791341 367242 ~ 397133 (-) True G12898
TU14333 other downstream 930957 257372 ~ 257517 (-) True G12894
TU14263 other downstream 1053549 129502 ~ 134925 (-) True G12848
TU14286 other downstream 1063017 122814 ~ 125457 (-) False CI01000001_00124107_00131285
TU15779 other upstream 573250 1763669 ~ 1767458 (-) False G14104
TU15917 other upstream 803791 1994210 ~ 1994898 (-) True G14219
TU15926 other upstream 865555 2055974 ~ 2056478 (-) True G14228
TU15886 other upstream 1068970 2262344 ~ 2297212 (-) True G14188
TU17347 other upstream 3201895 4392314 ~ 4399515 (-) True CI01000001_04395469_04399381

Expression Profile