RNA id: TU14940


Basic Information

Item Value
RNA id TU14940
length 370
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G13415
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 1258524 ~ 1258893 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTATTCTGGTTGATTTGACTTTGTAGTATGTTGAAACTCTAGGATAAGGGGCGTCACATTTCCCAAACACCAATCACAAAACACTGGTCTAGCCGACCAATCAGAGCACATTGTGCTTTTCAGAAGGCGGGGCTTCATAGAGACCGGAACTAAACAGGGGTGCGTTTCCCAAAAGCATCGTTAGCCAACTATGGTCGCAAGTTCCATTGAATTTTATTGGTAATGACGGAACTTGCGATGATGGCTGGCTTTGGGAAACGCACCCCAGAGCGTTACTAACAGACTGGGAAGAGAGGTGCTGCAACAATGTCAAATATGGGAAAAATAATATGTTTTTTGAACATTCAAGCATGAAAACCAATTCTAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14935 lncRNA downstream 5231 1252995 ~ 1253293 (-) True G13410
TU14934 lncRNA downstream 6176 1252125 ~ 1252348 (-) True G13409
TU14882 lncRNA downstream 23728 1188474 ~ 1234796 (-) True G13361
TU14887 lncRNA downstream 43014 1186160 ~ 1215510 (-) True G13364
TU14880 lncRNA downstream 68105 1188474 ~ 1190419 (-) False G13361
TU15212 lncRNA upstream 151994 1410887 ~ 1411156 (-) True G13618
TU15213 lncRNA upstream 152551 1411444 ~ 1411651 (-) True G13619
TU15175 lncRNA upstream 297350 1556243 ~ 1576197 (-) True G13582
TU15274 lncRNA upstream 389169 1648062 ~ 1648288 (-) True G13670
TU15275 lncRNA upstream 390299 1649192 ~ 1649430 (-) True G13671
CI01000001_01199556_01205086.mRNA mRNA downstream 53438 1199498 ~ 1205086 (-) True CI01000001_01199556_01205086
CI01000001_01158947_01164142.mRNA mRNA downstream 93373 1158398 ~ 1165151 (-) True CI01000001_01158947_01164142
CI01000001_01068423_01079855.mRNA mRNA downstream 177907 1067640 ~ 1080617 (-) True CI01000001_01068423_01079855
CI01000001_01056812_01066005.mRNA mRNA downstream 192401 1056452 ~ 1066123 (-) True CI01000001_01056812_01066005
CI01000001_01033836_01034518.mRNA mRNA downstream 223849 1033336 ~ 1034675 (-) False CI01000001_01033836_01034518
CI01000001_01293807_01304836.mRNA mRNA upstream 34805 1293698 ~ 1304836 (-) True CI01000001_01293807_01304836
CI01000001_01313263_01351961.mRNA mRNA upstream 53794 1312687 ~ 1352235 (-) True CI01000001_01313263_01351961
CI01000001_01368611_01369774.mRNA mRNA upstream 109512 1368405 ~ 1369799 (-) True CI01000001_01368611_01369774
CI01000001_01377825_01378304.mRNA mRNA upstream 117899 1376792 ~ 1378304 (-) True CI01000001_01377825_01378304
CI01000001_01421483_01453330.mRNA mRNA upstream 162037 1420930 ~ 1453330 (-) True CI01000001_01421483_01453330
TU14337 other downstream 861391 367242 ~ 397133 (-) True G12898
TU14333 other downstream 1001007 257372 ~ 257517 (-) True G12894
TU14263 other downstream 1123599 129502 ~ 134925 (-) True G12848
TU14286 other downstream 1133067 122814 ~ 125457 (-) False CI01000001_00124107_00131285
TU15779 other upstream 504776 1763669 ~ 1767458 (-) False G14104
TU15917 other upstream 735317 1994210 ~ 1994898 (-) True G14219
TU15926 other upstream 797081 2055974 ~ 2056478 (-) True G14228
TU15886 other upstream 1000496 2262344 ~ 2297212 (-) True G14188
TU17347 other upstream 3133421 4392314 ~ 4399515 (-) True CI01000001_04395469_04399381

Expression Profile