RNA id: TCONS_00012939


Basic Information

Item Value
RNA id TCONS_00012939
length 2066
RNA type mRNA
GC content 0.44
exon number 7
gene id XLOC_006716
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 31424586 ~ 31470439 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTGGATTCAGTCCAACAAGCAACCCGTTTGAGCCGCCCAGTTACACATCTGCCACTGATAAAGCTAGTAACCCATTTGACAAGCCACAAACCAACAAGGTCAGTGCTAGTAACCCATTTGATCTCTCTGCGGGTTCCAAGATGGGCTTCGGTCAGTCCAGTAACCCACCACTTTACAGTCTGCTAAGAGAGGAAAGAGAGGCAGAGCTCGATAGCGACCTGCTAATTGAATCAGCTTCGGAGGAAAGTCCCAAGAGGGAGCAGGAATATTCTGCTCCAAAACCACCAGAACCATCTTCCCCCCTGATCACAGACAACATGTCTTCAAAGCCCATCACGACCTCTAGCGTCTCTTCCTCTCCATTCACTGAGCCCAGAGTCGTCAGCGCTCAGAAAGAACCGGAGAAAGAAAAGGAGAAGGAAAAGGAGAAAGCAGCACCAATTGAGAAGCCCAAGCCACAACCAGAGGACAGCTGGTCCACCAAACCCAGGCCCGCAGTAATGGGAACGTCTACAGTGACTCCGGAGAAGCAGCCCAGTCAGGAGACGGAGAGTAAAAGCAAAAGCAGTATTGTTAGTTCGAGCACAGAGAAAGAGGCTGATCTGTCCTTGCTTCTCCATGGCTTCAGCAGACAGAAAGTGGTAGATCTAGTACACTGGCGGGATCTGAAGCAGTCTGGACTGGTGTTTGGCAGTGTGCTGCTGCTGCTCTTCTCTTTAACCCAGTTCAGTGTGGTGAGTGTTATAGCGTATCTGGCTCTGGCTGTCCTCTCTGCTACCATCAGCTTCCGAGTCTACAAATCAGTCCTGCAGGCAGTGCAGAAAACTGATGAGGGCCATCCATTCAAGTCCTATCTGGAGGTGGAAATCTCTCTTTCTGCTGATCAGATTAGTAAGTATGTGGACAAGACTCAACTGTACATCAATACCACCATGAAGGAGCTCCGCAGGCTGTTCCTGGTTCAAGATCTGGTCGACTCCATTAAGTTTGCAGTGTTGATGTGGTTGTTGACCTATGTTGGAGCTCTGTTTAATGGCCTGACCTTGTTAATTCTGGctgtgatTTCCATGTTTAGTGTGCCAGTGGTTTACGAGAAGTACCAGacACAGATTGATCAATACTTAGGACTGGTGCGCACCCAGGTTAACTCAGTAATGGGAAAGATTAGAGAAAAGGTTCCTGGGGCCAAAAAGAAGGAATAAACTCTTCACTTCTGTACAAGTAAACACTATAGCCAGTAAAAACTACAACTTTTGCCAGCACTGAAGGAACCCAACTACATAGGTGGCCAATACagcacctcaaaaaaaaaaagttaaaaaaaatttaaaaaaagcaacaacaacaacaaaaaaagattgtCATGTTAGTACAACGGCACAGATAAGACCCCCACCATCCGTTGCCAGTCACAGGTGAAGTCCTGCATAAATAGCTAACACAGATTCACATAAACGACACCTTGTGGGCGATTTGTAGAGCTATAGATATAACAGAgggacgcacacacacagtgtttCTCTCTTCCATTGCTTCTGATTTAAGTGCATGAAGTCCAGTCTTGAGTAAATATTTGTTATCTCTGCAGTGCTCTTCCTCTGCTTTATTTTGCAGTGCATATTTCCTGCTGTAAAACGTGACACGAAAAATGAAAAATCATGCCTGTCATATAATCTCCTGCTGCCATGTCGATTAATCGCTTAATTCACCGTCACCAGTAGAGTGGCTCTGTGTACAGACATACTTATTAATATCAAGTTGAATTGtggaatttctttctttcttttggttCCTTTCTGTGTATTCCAGCACAATGATAATTTGGAGATGTTATTACTAAATGTGTAACTGTAATTTTTGCAGAAACTGTAGGGACACGTGTAGGTGTTTAAAGACAAGCTTTGTGGTCCTTCTTTAGGGCATCTGATGGTCAGACTGCAGAGCTCCAGCTGTACTAAAACTCTGTCCAACTTTGTACGATGTTCAGTGTTCGGTTATTTTAAAGTCTTTAACTATTTGCACTCTGTATTTAATTGACGaatgagaaaaataaatgttCCTTAAT

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2426 Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in several structures, including digestive system; nervous system; neural rod; trigeminal placode; and yolk syncytial layer. Orthologous to human RTN1 (reticulon 1).

Ensembl:

ensembl_id ENSDART00000193268

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012935 lncRNA downstream 27506 31394711 ~ 31397088 (-) True XLOC_006715
TCONS_00012923 lncRNA downstream 257989 31160187 ~ 31166605 (-) False XLOC_006709
TCONS_00013844 lncRNA downstream 301756 31108526 ~ 31122838 (-) True XLOC_006707
TCONS_00013842 lncRNA downstream 301834 31102907 ~ 31122760 (-) False XLOC_006707
TCONS_00013845 lncRNA upstream 347516 31800032 ~ 31800406 (-) True XLOC_006723
TCONS_00013846 lncRNA upstream 497641 31950157 ~ 31953845 (-) False XLOC_006727
TCONS_00013847 lncRNA upstream 497641 31950157 ~ 31955798 (-) True XLOC_006727
TCONS_00013489 lncRNA upstream 530545 31983061 ~ 31995753 (-) False XLOC_006728
TCONS_00012957 lncRNA upstream 530545 31983061 ~ 31995905 (-) False XLOC_006728
TCONS_00012934 mRNA downstream 26607 31393192 ~ 31397987 (-) False XLOC_006715
TCONS_00012933 mRNA downstream 34933 31379784 ~ 31389661 (-) True XLOC_006714
TCONS_00012932 mRNA downstream 45911 31372492 ~ 31378683 (-) True XLOC_006713
TCONS_00012931 mRNA downstream 47295 31371536 ~ 31377299 (-) False XLOC_006713
TCONS_00012929 mRNA downstream 75310 31343516 ~ 31349284 (-) False XLOC_006712
TCONS_00012941 mRNA upstream 84193 31536709 ~ 31544365 (-) True XLOC_006717
TCONS_00012943 mRNA upstream 167445 31619961 ~ 31622195 (-) True XLOC_006719
TCONS_00012945 mRNA upstream 184216 31636732 ~ 31647323 (-) True XLOC_006720
TCONS_00012946 mRNA upstream 229472 31681988 ~ 31687925 (-) True XLOC_006721
TCONS_00012948 mRNA upstream 353308 31805824 ~ 31812394 (-) False XLOC_006724
TCONS_00012930 other downstream 72822 31346595 ~ 31351772 (-) True XLOC_006712
TCONS_00012925 other downstream 219401 31193485 ~ 31205193 (-) True XLOC_006710
TCONS_00012917 other downstream 297548 31126449 ~ 31127046 (-) True XLOC_006708
TCONS_00012916 other downstream 348647 31075833 ~ 31075947 (-) True XLOC_006705
TCONS_00012906 other downstream 552155 30855319 ~ 30872439 (-) True XLOC_006699
TCONS_00012942 other upstream 126932 31579448 ~ 31579564 (-) True XLOC_006718
TCONS_00012944 other upstream 184216 31636732 ~ 31647006 (-) False XLOC_006720
TCONS_00012947 other upstream 242415 31694931 ~ 31695047 (-) True XLOC_006722
TCONS_00012961 other upstream 1136036 32588552 ~ 32595220 (-) False XLOC_006734
TCONS_00013011 other upstream 2159187 33611703 ~ 33639021 (-) False XLOC_006759

Expression Profile

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