RNA id: TU15255


Basic Information

Item Value
RNA id TU15255
length 455
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G13656
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 1660255 ~ 1660709 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGATACCCAAGTTCCTGAGTTGGCCGTCCCACTTTAACTTTAAACATGGCGGAAGGGAGAATGATTGCTGCTATGACTGCTATTCTTTATTAGCTTTTTCCACAACAGCTACATCGCCTTGTCCTTAGATTAGTGCATACATACAGTAGGCTATATGAATAATCATTTCCTCAATGATTCCTGTTCTTTCCGACAACAAAGCACTTGAATGCAACAAGCTCGTATTCACGACTTCAGAAGTAGGAAATTTTCCAATAGCACGTGAAGGCAGTATTAAACCCTACTCTGATGTAGGAGCTAGTTCCCCCAAAAGGTGTTCCTAGAACTAAAATCGTTTCCAGTTCCTGAGGTGTGAACACGACAAAAAGCGGGTCCGCTATTAGTTCCAGGAAACTATGAAAAGGTTCCTCTGGTGTGGTTCCTTCTCAAATTAAACTAGTATATATTTATCTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15275 lncRNA downstream 10825 1649192 ~ 1649430 (-) True G13671
TU15274 lncRNA downstream 11967 1648062 ~ 1648288 (-) True G13670
TU15175 lncRNA downstream 84058 1556243 ~ 1576197 (-) True G13582
TU15213 lncRNA downstream 248604 1411444 ~ 1411651 (-) True G13619
TU15212 lncRNA downstream 249099 1410887 ~ 1411156 (-) True G13618
TU15278 lncRNA upstream 5715 1666424 ~ 1667059 (-) True G13674
TU15282 lncRNA upstream 15097 1675806 ~ 1676078 (-) True G13678
TU15283 lncRNA upstream 15830 1676539 ~ 1676893 (-) True G13679
TU15769 lncRNA upstream 88397 1749106 ~ 1753231 (-) False G14096
TU15770 lncRNA upstream 89484 1750193 ~ 1750729 (-) True G14096
CI01000001_01637015_01638058.mRNA mRNA downstream 22197 1636695 ~ 1638058 (-) True CI01000001_01637015_01638058
CI01000001_01582644_01584095.mRNA mRNA downstream 75815 1582644 ~ 1584440 (-) True CI01000001_01582644_01584095
CI01000001_01565290_01569360.mRNA mRNA downstream 90895 1565290 ~ 1569360 (-) True CI01000001_01565290_01569360
CI01000001_01555180_01558113.mRNA mRNA downstream 102142 1554301 ~ 1558113 (-) True CI01000001_01555180_01558113
CI01000001_01476453_01500640.mRNA mRNA downstream 159287 1475534 ~ 1500968 (-) True CI01000001_01476453_01500640
CI01000001_01707363_01743870.mRNA mRNA upstream 46380 1707089 ~ 1743870 (-) True CI01000001_01707363_01743870
CI01000001_01757774_01758445.mRNA mRNA upstream 96480 1757189 ~ 1759443 (-) True CI01000001_01757774_01758445
CI01000001_01760676_01761671.mRNA mRNA upstream 99457 1760166 ~ 1761671 (-) True CI01000001_01760676_01761671
CI01000001_01772744_01773670.mRNA mRNA upstream 111622 1772331 ~ 1773670 (-) True CI01000001_01772744_01773670
CI01000001_01873684_01874535.mRNA mRNA upstream 212931 1873640 ~ 1874535 (-) True CI01000001_01873684_01874535
TU14337 other downstream 1263122 367242 ~ 397133 (-) True G12898
TU14333 other downstream 1402738 257372 ~ 257517 (-) True G12894
TU14263 other downstream 1525330 129502 ~ 134925 (-) True G12848
TU14286 other downstream 1534798 122814 ~ 125457 (-) False CI01000001_00124107_00131285
TU15779 other upstream 102960 1763669 ~ 1767458 (-) False G14104
TU15917 other upstream 333501 1994210 ~ 1994898 (-) True G14219
TU15926 other upstream 395265 2055974 ~ 2056478 (-) True G14228
TU15886 other upstream 598680 2262344 ~ 2297212 (-) True G14188
TU17347 other upstream 2731605 4392314 ~ 4399515 (-) True CI01000001_04395469_04399381

Expression Profile