RNA id: TU15915


Basic Information

Item Value
RNA id TU15915
length 903
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G14217
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 2004161 ~ 2005063 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTGTGCGCAAAAACAAAATAAAAATAACATCTTTATTCATCAAATTCGAATGACCCCTGTCATTCTCCTACGTTGTTTACATTCAGCGCTTCCAGGTTCTTCGTCCGAACGCCAGCTCAGTATTGGTGTGCCAGCATCACTCGCATGCGTAGTGCTGCTCACATGTACAGCACTGGCCAATAATAAGGGTGCATTCACACTTGTAGTTCGGTTCGTTTGGTTAATTTGGTCCGGACCAAAAAAGGAAAAAAAACATTTAGTCCTGGCTTGATTAGCGTTCAGATTGGCAATTTTATCACCGAACCAAAAGATACCGAACCTAAAGTCATAGGGATACATTCACAACCTGATTGGTCGGATTTTATGACGTATTGCCTATTTTGAGACGGAACTTACCAAACATCCAAAACAATGCTGTGCGCTGAGATAAATGCGCTCGTTGTGTGTGCGTAGCCTGCATATGATGGTATTTTGGCCAGCTGGGAACTCGTGAAGAGCTTATAAAATGTGTAAAGGAGTCAAAACAGCAGCGGGAATCCCTCCGTCACACACACAAACGATCTGCTGCGTGGAGACGCACGTCTGATGCCTGTGATGGGCAAACTCACGACTATGACAAGAAAAACCGATATGCGTGAGGATTCTGTCCTTTTTAGGGTCTCATCTTCCTGTTTATGGTTCGTTTACATGTCTTTGGTCCGTGTTGCCTTCATATATCATTCGAACCACACCAGAGTTCGTTTGGAAGCGGACCGAGACCCATCTTTTCAGCGGTCTCGGTCCACTTGTTTGGTGCGCACCATGATTCGGATGGCAGCGTTCACATATGTTCAAATGAACCGCACTAACAGTATACTGGTCGCTTCATAACATTAAAGTTGAACCACTGTAGTCACATTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15965 lncRNA downstream 28294 1975195 ~ 1975867 (-) True G14267
TU15959 lncRNA downstream 81921 1921899 ~ 1922240 (-) True G14261
TU15957 lncRNA downstream 83315 1920595 ~ 1920846 (-) True G14259
TU15955 lncRNA downstream 108071 1893706 ~ 1896090 (-) True G14257
TU15791 lncRNA downstream 132595 1867635 ~ 1871566 (-) True G14112
TU15911 lncRNA upstream 232 2005295 ~ 2007049 (-) True G14213
TU15914 lncRNA upstream 97093 2102156 ~ 2102501 (-) True G14216
TU15896 lncRNA upstream 97526 2102589 ~ 2103469 (-) True G14198
TU15999 lncRNA upstream 113292 2118355 ~ 2118566 (-) True G14293
TU16003 lncRNA upstream 138078 2143141 ~ 2143365 (-) True G14297
CI01000001_01999489_02002753.mRNA mRNA downstream 1233 1998128 ~ 2002928 (-) True CI01000001_01999489_02002753
CI01000001_01976950_01992032.mRNA mRNA downstream 10600 1976716 ~ 1993561 (-) True CI01000001_01976950_01992032
CI01000001_01932927_01933914.mRNA mRNA downstream 70247 1932621 ~ 1933914 (-) True CI01000001_01932927_01933914
CI01000001_01902970_01917410.mRNA mRNA downstream 86707 1902429 ~ 1917454 (-) True CI01000001_01902970_01917410
CI01000001_01873684_01874535.mRNA mRNA downstream 129626 1873640 ~ 1874535 (-) True CI01000001_01873684_01874535
CI01000001_02057429_02071506.mRNA mRNA upstream 51751 2056814 ~ 2071506 (-) True CI01000001_02057429_02071506
CI01000001_02126257_02127537.mRNA mRNA upstream 120002 2125065 ~ 2127567 (-) True CI01000001_02126257_02127537
CI01000001_02141590_02142836.mRNA mRNA upstream 136497 2141560 ~ 2142986 (-) True CI01000001_02141590_02142836
CI01000001_02159372_02162554.mRNA mRNA upstream 154096 2159159 ~ 2162554 (-) True CI01000001_02159372_02162554
CI01000001_02173311_02179118.mRNA mRNA upstream 167707 2172770 ~ 2180987 (-) True CI01000001_02173311_02179118
TU15917 other downstream 9263 1994210 ~ 1994898 (-) True G14219
TU15779 other downstream 236703 1763669 ~ 1767458 (-) False G14104
TU14337 other downstream 1607028 367242 ~ 397133 (-) True G12898
TU14333 other downstream 1746644 257372 ~ 257517 (-) True G12894
TU14263 other downstream 1869236 129502 ~ 134925 (-) True G12848
TU15926 other upstream 50911 2055974 ~ 2056478 (-) True G14228
TU15886 other upstream 254326 2262344 ~ 2297212 (-) True G14188
TU17347 other upstream 2387251 4392314 ~ 4399515 (-) True CI01000001_04395469_04399381
TU17350 other upstream 2471221 4476800 ~ 4478145 (-) True G15528
TU17475 other upstream 2564019 4569082 ~ 4618357 (-) True G15639

Expression Profile