RNA id: TCONS_00013845


Basic Information

Item Value
RNA id TCONS_00013845
length 281
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id XLOC_006723
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 31800032 ~ 31800406 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAAGATGAGTTGCAGAAACACCACAATAGATTCTGCATCTAAAAACAGTTCTGCTGAGTAATACAGATCTGAGTCATCACAATCTTCTGTCCTATTCCACCAGTTCTATTAAAGTGCATTCAAAGAAACTCAAAATCTTCTATAATGCTCCAGTCCTCTGCACTGaAAGCATTGATTCATCATCAACCACGTGGTGTTTTTCCACCTACCTGACACATGTCCATCACCTCAAAACACAGAGACAGCAGAGCCCAGAACAGCTACAGGTGAAACATTCTCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012935 lncRNA downstream 402944 31394711 ~ 31397088 (-) True XLOC_006715
TCONS_00012923 lncRNA downstream 633427 31160187 ~ 31166605 (-) False XLOC_006709
TCONS_00013844 lncRNA downstream 677194 31108526 ~ 31122838 (-) True XLOC_006707
TCONS_00013842 lncRNA downstream 677272 31102907 ~ 31122760 (-) False XLOC_006707
TCONS_00013843 lncRNA downstream 677272 31105176 ~ 31122760 (-) False XLOC_006707
TCONS_00013846 lncRNA upstream 149751 31950157 ~ 31953845 (-) False XLOC_006727
TCONS_00013847 lncRNA upstream 149751 31950157 ~ 31955798 (-) True XLOC_006727
TCONS_00013489 lncRNA upstream 182655 31983061 ~ 31995753 (-) False XLOC_006728
TCONS_00012957 lncRNA upstream 182655 31983061 ~ 31995905 (-) False XLOC_006728
TCONS_00013848 lncRNA upstream 182996 31983402 ~ 31988830 (-) False XLOC_006728
TCONS_00012946 mRNA downstream 112107 31681988 ~ 31687925 (-) True XLOC_006721
TCONS_00012945 mRNA downstream 152709 31636732 ~ 31647323 (-) True XLOC_006720
TCONS_00012943 mRNA downstream 177837 31619961 ~ 31622195 (-) True XLOC_006719
TCONS_00012941 mRNA downstream 255667 31536709 ~ 31544365 (-) True XLOC_006717
TCONS_00012940 mRNA downstream 329593 31424594 ~ 31470439 (-) True XLOC_006716
TCONS_00012948 mRNA upstream 5418 31805824 ~ 31812394 (-) False XLOC_006724
TCONS_00012949 mRNA upstream 10100 31810506 ~ 31829786 (-) True XLOC_006724
TCONS_00012950 mRNA upstream 43605 31844011 ~ 31866276 (-) False XLOC_006725
TCONS_00012951 mRNA upstream 43605 31844011 ~ 31878043 (-) False XLOC_006725
TCONS_00012952 mRNA upstream 43605 31844011 ~ 31878263 (-) False XLOC_006725
TCONS_00012947 other downstream 104985 31694931 ~ 31695047 (-) True XLOC_006722
TCONS_00012944 other downstream 153026 31636732 ~ 31647006 (-) False XLOC_006720
TCONS_00012942 other downstream 220468 31579448 ~ 31579564 (-) True XLOC_006718
TCONS_00012938 other downstream 359092 31424590 ~ 31440940 (-) False XLOC_006716
TCONS_00012930 other downstream 448260 31346595 ~ 31351772 (-) True XLOC_006712
TCONS_00012961 other upstream 788146 32588552 ~ 32595220 (-) False XLOC_006734
TCONS_00013011 other upstream 1811297 33611703 ~ 33639021 (-) False XLOC_006759
TCONS_00013017 other upstream 1859302 33659708 ~ 33662353 (-) False XLOC_006761
TCONS_00013028 other upstream 2838223 34638629 ~ 34638746 (-) True XLOC_006768
TCONS_00013029 other upstream 2843744 34644150 ~ 34644281 (-) True XLOC_006769

Expression Profile

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