RNA id: TU17094


Basic Information

Item Value
RNA id TU17094
length 452
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G15298
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 4040302 ~ 4040753 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCTAATTGTAATAATACAGGAAATACAAAGCTCTGTCATGAAACTCTAGATGGCACAGGCTGATAGGTCCTTAATTCAATCTGCTTGCAATCACATCATTATCTATAGGGCACAGCTGATTGGTTCCTGCTGTATCAGTAGCCAATGAGCTCACTTCACAACCTTCAAATACTTGGTCAGCATTGCTGTAGCAGTTGCAGCGCACTTTCAGAAACCCTCCACCTTCCCCAGCTCCACCTGTATAGATCTTCTGCATGTGCAATTAAATATCCATTACTGGCAATATAATACAATAAAATCTCTAATATCAGCCAGCATTTAATAGTACTGGATCATGCATCCAAAATTTGGGGGTCAGTAAGATTTGTTTTGTTTTTGATTTTTTTAAAGAAAGAAATTAATTATTTTATTTAGTAAAAACACATTAAACTGACAAAAAGTGGCAGTAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17035 lncRNA upstream 58648 3981451 ~ 3981654 (+) True G15245
TU17029 lncRNA upstream 62451 3977041 ~ 3977851 (+) True G15239
TU17015 lncRNA upstream 87385 3952372 ~ 3952917 (+) True G15225
TU16998 lncRNA upstream 100622 3938659 ~ 3939680 (+) True G15208
TU16992 lncRNA upstream 105467 3934572 ~ 3934835 (+) True G15202
TU17083 lncRNA downstream 59369 4100122 ~ 4133524 (+) True G15287
TU17109 lncRNA downstream 63056 4103809 ~ 4109360 (+) True G15313
TU17084 lncRNA downstream 199798 4240551 ~ 4273985 (+) True G15288
TU17137 lncRNA downstream 303135 4343888 ~ 4348581 (+) True G15338
TU17160 lncRNA downstream 315463 4356216 ~ 4356616 (+) True G15360
CI01000001_03983212_04011240.mRNA mRNA upstream 28706 3983128 ~ 4011596 (+) True CI01000001_03983212_04011240
CI01000001_03867875_03890850.mRNA mRNA upstream 149313 3867840 ~ 3890989 (+) True CI01000001_03867875_03890850
CI01000001_03865986_03866675.mRNA mRNA upstream 173150 3865357 ~ 3867152 (+) False CI01000001_03865986_03866675
CI01000001_03830254_03833027.mRNA mRNA upstream 207275 3830254 ~ 3833027 (+) True CI01000001_03830254_03833027
CI01000001_03821989_03823336.mRNA mRNA upstream 216718 3821989 ~ 3823584 (+) True CI01000001_03821989_03823336
CI01000001_04085864_04225894.mRNA mRNA downstream 45111 4085864 ~ 4225894 (+) True CI01000001_04085864_04225894
CI01000001_04296723_04300348.mRNA mRNA downstream 255848 4296601 ~ 4300975 (+) True CI01000001_04296723_04300348
CI01000001_04311013_04315588.mRNA mRNA downstream 270260 4311013 ~ 4315765 (+) True CI01000001_04311013_04315588
CI01000001_04328211_04330988.mRNA mRNA downstream 286823 4327576 ~ 4331052 (+) True CI01000001_04328211_04330988
CI01000001_04369131_04373697.mRNA mRNA downstream 328378 4369131 ~ 4373972 (+) True CI01000001_04369131_04373697
TU16602 other upstream 418851 3616248 ~ 3616411 (+) True G14846
TU15116 other upstream 2369298 1668020 ~ 1671004 (+) True CI01000001_01668334_01670035
TU14532 other upstream 2995150 1043713 ~ 1045152 (+) True G13051
TU14049 other upstream 3548245 490574 ~ 492057 (+) True G12653
TU14066 other upstream 3555892 478386 ~ 478781 (+) True G12670
TU17650 other downstream 1020465 5061218 ~ 5064704 (+) False G15794
TU17651 other downstream 1020465 5061218 ~ 5063929 (+) True G15794
TU17699 other downstream 1245996 5289881 ~ 5289956 (+) True G15838
TU17891 other downstream 1671132 5711885 ~ 5714951 (+) True G15995
TU19033 other downstream 3491819 7532572 ~ 7540586 (+) False CI01000001_07531945_07539781

Expression Profile