RNA id: TU17160


Basic Information

Item Value
RNA id TU17160
length 401
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G15360
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 4356216 ~ 4356616 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCTATGTAGTGTTAAAGTAACACTGAAGCAGAGTTAAAGTTAATGAGATAATTAAGTGATTAAGTTATGATTGAGCATTAGTGATGAACACCTGCTGTTAACAAGCAGAATCCCTGAAGAGAAACACAATAACTACAAATGACTTTCAGCCACAGCCTTAGATGAAATCAACTGAAGATAAAAGACATTAAATCTCTCAAGATCTGAATAAACAACTCCACAAAAAGCATATTATCTCATTAAATTTAACTCTGATTCAGAGTTATTTTAACTCTATGTAGAGAGGGACCATATGTTCTCTGAGCAGAGTTGATTTAACTCTGGGGATTTTGCTGTGTAGGGTGATATTAAATGACATAAACAGTAATGTAAGATTTTGGATATATTGTCCATCTTTAAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17137 lncRNA upstream 7635 4343888 ~ 4348581 (+) True G15338
TU17084 lncRNA upstream 82231 4240551 ~ 4273985 (+) True G15288
TU17083 lncRNA upstream 222692 4100122 ~ 4133524 (+) True G15287
TU17109 lncRNA upstream 246856 4103809 ~ 4109360 (+) True G15313
TU17094 lncRNA upstream 315463 4040302 ~ 4040753 (+) True G15298
TU17138 lncRNA downstream 70072 4426688 ~ 4426754 (+) True G15339
TU17170 lncRNA downstream 125222 4481838 ~ 4486799 (+) True G15370
TU17172 lncRNA downstream 130304 4486920 ~ 4491381 (+) False G15371
TU17173 lncRNA downstream 130304 4486920 ~ 4491381 (+) False G15371
TU17174 lncRNA downstream 130304 4486920 ~ 4491381 (+) True G15371
CI01000001_04328211_04330988.mRNA mRNA upstream 25164 4327576 ~ 4331052 (+) True CI01000001_04328211_04330988
CI01000001_04311013_04315588.mRNA mRNA upstream 40451 4311013 ~ 4315765 (+) True CI01000001_04311013_04315588
CI01000001_04296723_04300348.mRNA mRNA upstream 55241 4296601 ~ 4300975 (+) True CI01000001_04296723_04300348
CI01000001_04085864_04225894.mRNA mRNA upstream 130322 4085864 ~ 4225894 (+) True CI01000001_04085864_04225894
CI01000001_03983212_04011240.mRNA mRNA upstream 344620 3983128 ~ 4011596 (+) True CI01000001_03983212_04011240
CI01000001_04369131_04373697.mRNA mRNA downstream 12515 4369131 ~ 4373972 (+) True CI01000001_04369131_04373697
CI01000001_04422037_04431229.mRNA mRNA downstream 65421 4422037 ~ 4432132 (+) False CI01000001_04422037_04431229
CI01000001_04433559_04437385.mRNA mRNA downstream 76943 4433559 ~ 4437450 (+) True CI01000001_04433559_04437385
CI01000001_04462781_04463560.mRNA mRNA downstream 106165 4462781 ~ 4464613 (+) True CI01000001_04462781_04463560
CI01000001_04543164_04553053.mRNA mRNA downstream 186002 4542618 ~ 4553673 (+) True CI01000001_04543164_04553053
TU16602 other upstream 734765 3616248 ~ 3616411 (+) True G14846
TU15116 other upstream 2685212 1668020 ~ 1671004 (+) True CI01000001_01668334_01670035
TU14532 other upstream 3311064 1043713 ~ 1045152 (+) True G13051
TU14049 other upstream 3864159 490574 ~ 492057 (+) True G12653
TU14066 other upstream 3871806 478386 ~ 478781 (+) True G12670
TU17650 other downstream 704602 5061218 ~ 5064704 (+) False G15794
TU17651 other downstream 704602 5061218 ~ 5063929 (+) True G15794
TU17699 other downstream 930133 5289881 ~ 5289956 (+) True G15838
TU17891 other downstream 1355269 5711885 ~ 5714951 (+) True G15995
TU19033 other downstream 3175956 7532572 ~ 7540586 (+) False CI01000001_07531945_07539781

Expression Profile