RNA id: TU17170


Basic Information

Item Value
RNA id TU17170
length 404
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G15370
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 4481838 ~ 4486799 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCAGCATCTNNNNNNNNNNNNNNNAGATGGCATCAGCAGTCTGTTCCTTCGGATGAAGAACACTAAGCAGTCTGATCTTGTTTTCCCCAGTAGCTTTGTCAAAAAAGCCCAACAGGACCACATTGGCCTCTTTCTCGTCCTCAAGCTCCACCGCATGGTATAAATAAAGGCAGTATGGAGTCTGACTGCAGGACGCTGTAACATCTTCCCAGTATTTCTTGCCTAATACTAGACTGTACTTGCTATTGGTACAGTTTGATCCAGCATCAGCTGAGGTAGATGGGCAATACTTTCTGGTGAAACACATCCAGGAGAAAGACTCATGTGACACCTTCTTAGCATTTATCATTTTCTGGTTTAGACACTTTGTTTCTACAGGACTGTAGAGTGTTGAAGAATGTTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17138 lncRNA upstream 49236 4426688 ~ 4426754 (+) True G15339
TU17160 lncRNA upstream 125222 4356216 ~ 4356616 (+) True G15360
TU17137 lncRNA upstream 133257 4343888 ~ 4348581 (+) True G15338
TU17084 lncRNA upstream 207853 4240551 ~ 4273985 (+) True G15288
TU17083 lncRNA upstream 348314 4100122 ~ 4133524 (+) True G15287
TU17172 lncRNA downstream 121 4486920 ~ 4491381 (+) False G15371
TU17173 lncRNA downstream 121 4486920 ~ 4491381 (+) False G15371
TU17174 lncRNA downstream 121 4486920 ~ 4491381 (+) True G15371
TU17225 lncRNA downstream 79471 4566270 ~ 4566542 (+) True G15404
TU17194 lncRNA downstream 111878 4598677 ~ 4726740 (+) False G15389
CI01000001_04462781_04463560.mRNA mRNA upstream 17225 4462781 ~ 4464613 (+) True CI01000001_04462781_04463560
CI01000001_04433559_04437385.mRNA mRNA upstream 44388 4433559 ~ 4437450 (+) True CI01000001_04433559_04437385
CI01000001_04422037_04431229.mRNA mRNA upstream 49706 4422037 ~ 4432132 (+) False CI01000001_04422037_04431229
CI01000001_04369131_04373697.mRNA mRNA upstream 107866 4369131 ~ 4373972 (+) True CI01000001_04369131_04373697
CI01000001_04328211_04330988.mRNA mRNA upstream 150786 4327576 ~ 4331052 (+) True CI01000001_04328211_04330988
CI01000001_04543164_04553053.mRNA mRNA downstream 55819 4542618 ~ 4553673 (+) True CI01000001_04543164_04553053
CI01000001_04567822_04568927.mRNA mRNA downstream 80665 4567464 ~ 4569260 (+) True CI01000001_04567822_04568927
CI01000001_04586080_04595939.mRNA mRNA downstream 99097 4585896 ~ 4596418 (+) True CI01000001_04586080_04595939
CI01000001_04624476_04679572.mRNA mRNA downstream 137677 4624476 ~ 4679829 (+) True CI01000001_04624476_04679572
CI01000001_04688934_04700615.mRNA mRNA downstream 202135 4688934 ~ 4700704 (+) True CI01000001_04688934_04700615
TU16602 other upstream 860387 3616248 ~ 3616411 (+) True G14846
TU15116 other upstream 2810834 1668020 ~ 1671004 (+) True CI01000001_01668334_01670035
TU14532 other upstream 3436686 1043713 ~ 1045152 (+) True G13051
TU14049 other upstream 3989781 490574 ~ 492057 (+) True G12653
TU14066 other upstream 3997428 478386 ~ 478781 (+) True G12670
TU17650 other downstream 574419 5061218 ~ 5064704 (+) False G15794
TU17651 other downstream 574419 5061218 ~ 5063929 (+) True G15794
TU17699 other downstream 799950 5289881 ~ 5289956 (+) True G15838
TU17891 other downstream 1225086 5711885 ~ 5714951 (+) True G15995
TU19033 other downstream 3045773 7532572 ~ 7540586 (+) False CI01000001_07531945_07539781

Expression Profile