RNA id: TU17225


Basic Information

Item Value
RNA id TU17225
length 273
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G15404
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 4566270 ~ 4566542 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTTCCTGGAAAAAGAAGTTTTTAAATTGTACTTTTTTGTCATTTTTTTAGAAGTACAATAATGTATTGATGCCTTCAAAGCTAATAGACATAGGCAAAAGGTCACAGAAATTTATTAAATGGAGTTGAGCTGTCCAGAAATTTCAGAAATTTCCTCTTTTTTACTATGACACCCAATTGTTTGTACTTTCAGCGCACTGAATGTGTATCTGTATGTTGTGTCTGATTCAGTAACATGGCACTTGGAAGTTACACAAACACACTCAGCCCAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17172 lncRNA upstream 74889 4486920 ~ 4491381 (+) False G15371
TU17173 lncRNA upstream 74889 4486920 ~ 4491381 (+) False G15371
TU17174 lncRNA upstream 74889 4486920 ~ 4491381 (+) True G15371
TU17170 lncRNA upstream 79471 4481838 ~ 4486799 (+) True G15370
TU17138 lncRNA upstream 133668 4426688 ~ 4426754 (+) True G15339
TU17194 lncRNA downstream 32135 4598677 ~ 4726740 (+) False G15389
TU17211 lncRNA downstream 154133 4720675 ~ 4720905 (+) False G15393
TU17212 lncRNA downstream 154193 4720735 ~ 4720905 (+) True G15393
TU17193 lncRNA downstream 159646 4726188 ~ 4726740 (+) False G15389
TU17199 lncRNA downstream 159646 4726188 ~ 4726740 (+) True G15389
CI01000001_04543164_04553053.mRNA mRNA upstream 12597 4542618 ~ 4553673 (+) True CI01000001_04543164_04553053
CI01000001_04462781_04463560.mRNA mRNA upstream 101657 4462781 ~ 4464613 (+) True CI01000001_04462781_04463560
CI01000001_04433559_04437385.mRNA mRNA upstream 128820 4433559 ~ 4437450 (+) True CI01000001_04433559_04437385
CI01000001_04422037_04431229.mRNA mRNA upstream 134138 4422037 ~ 4432132 (+) False CI01000001_04422037_04431229
CI01000001_04369131_04373697.mRNA mRNA upstream 192298 4369131 ~ 4373972 (+) True CI01000001_04369131_04373697
CI01000001_04567822_04568927.mRNA mRNA downstream 922 4567464 ~ 4569260 (+) True CI01000001_04567822_04568927
CI01000001_04586080_04595939.mRNA mRNA downstream 19354 4585896 ~ 4596418 (+) True CI01000001_04586080_04595939
CI01000001_04624476_04679572.mRNA mRNA downstream 57934 4624476 ~ 4679829 (+) True CI01000001_04624476_04679572
CI01000001_04688934_04700615.mRNA mRNA downstream 122392 4688934 ~ 4700704 (+) True CI01000001_04688934_04700615
CI01000001_04701645_04713999.mRNA mRNA downstream 135103 4701645 ~ 4714153 (+) True CI01000001_04701645_04713999
TU16602 other upstream 944819 3616248 ~ 3616411 (+) True G14846
TU15116 other upstream 2895266 1668020 ~ 1671004 (+) True CI01000001_01668334_01670035
TU14532 other upstream 3521118 1043713 ~ 1045152 (+) True G13051
TU14049 other upstream 4074213 490574 ~ 492057 (+) True G12653
TU14066 other upstream 4081860 478386 ~ 478781 (+) True G12670
TU17650 other downstream 494676 5061218 ~ 5064704 (+) False G15794
TU17651 other downstream 494676 5061218 ~ 5063929 (+) True G15794
TU17699 other downstream 720207 5289881 ~ 5289956 (+) True G15838
TU17891 other downstream 1145343 5711885 ~ 5714951 (+) True G15995
TU19033 other downstream 2966030 7532572 ~ 7540586 (+) False CI01000001_07531945_07539781

Expression Profile