RNA id: TCONS_00013846


Basic Information

Item Value
RNA id TCONS_00013846
length 1511
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id XLOC_006727
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 31950157 ~ 31955798 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCAGTAAGCCATTGACTTCTTCATCTTTCATGTTCCACCCAAGAGAAAAACTCACCTGCATTGTGGATGAcctgaaggAGTTTGTGCCAGAATGCTGCCCGGAGCTGTTCAGCTTTTTTAGCAGGCCTGCTTTCCCAGGGAAAATTGATGAAGGCAACGAAAATAATGTGAAATGAAAAACTGAGGAGTAAAAGAGCCACAGCTCAAGGATCTCAACACAAACTCTTCCTACTGCGCTGCTACACGGCCTACTGTTCTACCACCTCAGAGACGCGGCAAGAGAGAACGAGGGCAGGGGAGGAGAGGAGGAAAGAGACCCTGACAAGCACATGCTTCTCCACCCAGGAGAACAACGCTGGAAGAAAGAAAAGCCTATAAGAGATTGGATGACAGAGTTCCAgcagagaaaataaatgaagaatttaGGTAGAGTGTTGACTTTTTACTCAACAAGAGAGAAAGATTGTTGGTTAGAAATATAGAGGAGATGGACGAAAAAAGAGAGAGACCAGAAGCAGAGTTTATATTGATGTAGTCAACTGATacattgtgtgcatgtatgtgcgtgtgtgcacAAGAAATGAAGTATGTGTTTTCTGTGCTACTAGCGACACCAAATGGAGctgtgttttaaaactaatactCGCATCTCTGCCATTGGTCTGTCATACGGATGACCCCGCCTTAAATTTGAGTCATTGTTGCTGTGCTAATCTGGTCAGAACTCTTAAacagaaaagtgtttttttttttttaaaggacattgttaaaatgaaaatgctCTCACCTTTAAGATGTTTTaacctttatgtgtttctttattctattgaaAACAGAAGAAGAGATTTTGAAGGAAGATAAaatcctgtaactattgacttccataggaaaaacaaatactacagacatcaatagttacaggttttgagatttctccaaaatatcttcttttgagttggaaaaacaggtttggaacaagtgagggaagagtaaatgatgacagaatcatttaaatcatttttagttGTACTATTTCTTGTTCAAACGCTGAATTGTTGATTTATAGGCACTTTTCCTTGtggatcagtggttctcaaccttttGGTATCGAAGGCTCCAACTGTCCAAGATAACATAAAAAGATTAAAATTGTACTCAACAAAAGACTCAACGTATATTTTTactagaaaaaaaatgaaaaagaaagaaaatattttcaatatttgatttaaaattatttgaagTTATCTTAACTAAAAAGATAATGAAATATAAGATGAATCTTTTTTACTCTTAATGTCAAtgcatgtttccaacattcttcaaaatatcttaatttgtgtttaacagactaaaataagtgaagttttgcaaactaatttcaagaggagaccgtgatatgattgatcatggTTAGTccctcatccgtaatcagtagtAATACAACCAGATTgatccaagcctacaataaatagagCGATTTCACCCTACTGCCTTGATGGAATTGGAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013845 lncRNA downstream 149751 31800032 ~ 31800406 (-) True XLOC_006723
TCONS_00012935 lncRNA downstream 553069 31394711 ~ 31397088 (-) True XLOC_006715
TCONS_00012923 lncRNA downstream 783552 31160187 ~ 31166605 (-) False XLOC_006709
TCONS_00013844 lncRNA downstream 827319 31108526 ~ 31122838 (-) True XLOC_006707
TCONS_00013842 lncRNA downstream 827397 31102907 ~ 31122760 (-) False XLOC_006707
TCONS_00013489 lncRNA upstream 29216 31983061 ~ 31995753 (-) False XLOC_006728
TCONS_00012957 lncRNA upstream 29216 31983061 ~ 31995905 (-) False XLOC_006728
TCONS_00013848 lncRNA upstream 29557 31983402 ~ 31988830 (-) False XLOC_006728
TCONS_00013850 lncRNA upstream 29557 31983402 ~ 31998951 (-) False XLOC_006728
TCONS_00013849 lncRNA upstream 29557 31983402 ~ 31998951 (-) False XLOC_006728
TCONS_00012956 mRNA downstream 11517 31925647 ~ 31938640 (-) True XLOC_006726
TCONS_00012955 mRNA downstream 11645 31925254 ~ 31938512 (-) False XLOC_006726
TCONS_00012954 mRNA downstream 61670 31877335 ~ 31888487 (-) True XLOC_006725
TCONS_00012953 mRNA downstream 69821 31844011 ~ 31880336 (-) False XLOC_006725
TCONS_00012952 mRNA downstream 71894 31844011 ~ 31878263 (-) False XLOC_006725
TCONS_00012959 mRNA upstream 621932 32575777 ~ 32577386 (-) True XLOC_006733
TCONS_00012960 mRNA upstream 626537 32580382 ~ 32626247 (-) False XLOC_006734
TCONS_00012964 mRNA upstream 673599 32627444 ~ 32635885 (-) False XLOC_006735
TCONS_00012966 mRNA upstream 673770 32627615 ~ 32635859 (-) False XLOC_006735
TCONS_00012965 mRNA upstream 673770 32627615 ~ 32635859 (-) False XLOC_006735
TCONS_00012947 other downstream 255110 31694931 ~ 31695047 (-) True XLOC_006722
TCONS_00012944 other downstream 303151 31636732 ~ 31647006 (-) False XLOC_006720
TCONS_00012942 other downstream 370593 31579448 ~ 31579564 (-) True XLOC_006718
TCONS_00012938 other downstream 509217 31424590 ~ 31440940 (-) False XLOC_006716
TCONS_00012930 other downstream 598385 31346595 ~ 31351772 (-) True XLOC_006712
TCONS_00012961 other upstream 634707 32588552 ~ 32595220 (-) False XLOC_006734
TCONS_00013011 other upstream 1657858 33611703 ~ 33639021 (-) False XLOC_006759
TCONS_00013017 other upstream 1705863 33659708 ~ 33662353 (-) False XLOC_006761
TCONS_00013028 other upstream 2684784 34638629 ~ 34638746 (-) True XLOC_006768
TCONS_00013029 other upstream 2690305 34644150 ~ 34644281 (-) True XLOC_006769

Expression Profile

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