RNA id: TU18075


Basic Information

Item Value
RNA id TU18075
length 259
lncRNA type antisense_over
GC content 0.27
exon number 1
gene id G16163
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 6137962 ~ 6138220 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAGATTGAGGGTTTCCAGTGCTGGGCCTCCAATGCCCTTAACATCAAACAGGCGGTTGTTGGCAAAGCTGAGCCACTGTAGGTAAGTGAGCTGGCCAAACGGCTGACCCTCGAACCTCTGAAGCAGGTTACTGTCTCCCTTCACCCACAACAGCTGAGTGAGGCCGGCCAATGGAGAGAAGTCTGACAAATGATTGGAGGAGATGTCCAAGTAGCGCAGATGGATGAAGGAGCTGATCAAGGCCAGGTCTGTCAGACC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17943 lncRNA upstream 11497 6105709 ~ 6126465 (+) True G16040
TU18046 lncRNA upstream 54518 6082686 ~ 6083444 (+) True G16141
TU18039 lncRNA upstream 69094 6068608 ~ 6068868 (+) True G16134
TU18036 lncRNA upstream 80614 6057139 ~ 6057348 (+) True G16131
TU18017 lncRNA upstream 128580 6008239 ~ 6009382 (+) True G16112
TU18085 lncRNA downstream 28472 6166692 ~ 6170565 (+) True G16171
TU18086 lncRNA downstream 38403 6176623 ~ 6177132 (+) True G16172
TU18102 lncRNA downstream 69412 6207632 ~ 6208354 (+) True G16188
TU18103 lncRNA downstream 70332 6208552 ~ 6208780 (+) True G16189
TU18107 lncRNA downstream 88639 6226859 ~ 6227145 (+) True G16193
CI01000001_06121398_06124748.mRNA mRNA upstream 13010 6121398 ~ 6124952 (+) True CI01000001_06121398_06124748
CI01000001_06040916_06041645.mRNA mRNA upstream 95352 6040916 ~ 6042610 (+) True CI01000001_06040916_06041645
CI01000001_05960289_05963221.mRNA mRNA upstream 174619 5958349 ~ 5963343 (+) True CI01000001_05960289_05963221
CI01000001_05942155_05943721.mRNA mRNA upstream 193943 5942155 ~ 5944019 (+) True CI01000001_05942155_05943721
CI01000001_05933655_05938581.mRNA mRNA upstream 198721 5933655 ~ 5939241 (+) True CI01000001_05933655_05938581
CI01000001_06297032_06300530.mRNA mRNA downstream 158812 6297032 ~ 6300660 (+) True CI01000001_06297032_06300530
CI01000001_06303405_06305351.mRNA mRNA downstream 165185 6303405 ~ 6305351 (+) True CI01000001_06303405_06305351
CI01000001_06309664_06321614.mRNA mRNA downstream 171141 6309361 ~ 6322088 (+) True CI01000001_06309664_06321614
CI01000001_06325915_06358454.mRNA mRNA downstream 186854 6325074 ~ 6358674 (+) True CI01000001_06325915_06358454
CI01000001_06363645_06370085.mRNA mRNA downstream 225425 6363645 ~ 6370101 (+) True CI01000001_06363645_06370085
TU17891 other upstream 423011 5711885 ~ 5714951 (+) True G15995
TU17699 other upstream 848006 5289881 ~ 5289956 (+) True G15838
TU17650 other upstream 1073258 5061218 ~ 5064704 (+) False G15794
TU17651 other upstream 1074033 5061218 ~ 5063929 (+) True G15794
TU16602 other upstream 2516511 3616248 ~ 3616411 (+) True G14846
TU19033 other downstream 1394352 7532572 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19037 other downstream 1394420 7532640 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19034 other downstream 1394544 7532764 ~ 7540460 (+) True CI01000001_07531945_07539781
TU19348 other downstream 1893904 8032124 ~ 8032483 (+) True G17234
TU19478 other downstream 3077802 9216022 ~ 9228859 (+) True G17353

Expression Profile