RNA id: TU19054


Basic Information

Item Value
RNA id TU19054
length 240
lncRNA type read_through
GC content 0.53
exon number 2
gene id G16977
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 7091753 ~ 7123993 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTATATATATATATATATATATATATGTAGATAGCTAAGGAACTGTGAACGTTGGAAAACATTCCTGAGGTAAAAGTGACATGATGTGACATATTGTTCACAAGCTGTTTTATTGACGTCTTTCCGCGGTTGAAACACAAATAAAGTCATTACATGAGACACGATACATTCTGGTAAGTTGTACAATATATTTCAACATACCTTTGATGTTCATTCATGTTCGAGATATAACTTACTGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18977 lncRNA upstream 145602 6936142 ~ 6946151 (+) True G16937
TU18962 lncRNA upstream 173491 6917686 ~ 6918262 (+) True G16922
TU18253 lncRNA upstream 291372 6800168 ~ 6800381 (+) True G16317
TU18214 lncRNA upstream 358828 6723809 ~ 6732925 (+) True CI01000001_06718133_06747744
TU18220 lncRNA upstream 418242 6672182 ~ 6673511 (+) True G16284
TU19101 lncRNA downstream 28101 7152094 ~ 7152425 (+) True G17019
TU19046 lncRNA downstream 155250 7279243 ~ 7284904 (+) True G16970
TU19141 lncRNA downstream 192671 7316664 ~ 7319030 (+) True G17057
TU19145 lncRNA downstream 199293 7323286 ~ 7323615 (+) True G17061
TU19055 lncRNA downstream 305197 7429190 ~ 7430067 (+) True G16978
CI01000001_07056922_07065716.mRNA mRNA upstream 25210 7056922 ~ 7066543 (+) True CI01000001_07056922_07065716
CI01000001_07045345_07052918.mRNA mRNA upstream 38783 7045345 ~ 7052970 (+) True CI01000001_07045345_07052918
CI01000001_06996957_07040074.mRNA mRNA upstream 51672 6996957 ~ 7040081 (+) True CI01000001_06996957_07040074
CI01000001_06981183_06981774.mRNA mRNA upstream 109949 6981183 ~ 6981804 (+) True CI01000001_06981183_06981774
CI01000001_06960133_06963752.mRNA mRNA upstream 127323 6960133 ~ 6964430 (+) True CI01000001_06960133_06963752
CI01000001_07208833_07215412.mRNA mRNA downstream 84290 7208283 ~ 7215507 (+) True CI01000001_07208833_07215412
CI01000001_07231558_07266828.mRNA mRNA downstream 107565 7231558 ~ 7266902 (+) True CI01000001_07231558_07266828
CI01000001_07330166_07335508.mRNA mRNA downstream 206173 7330166 ~ 7336036 (+) True CI01000001_07330166_07335508
CI01000001_07405859_07406484.mRNA mRNA downstream 281151 7405144 ~ 7406689 (+) True CI01000001_07405859_07406484
CI01000001_07421548_07447343.mRNA mRNA downstream 297555 7421548 ~ 7447505 (+) False CI01000001_07421548_07447343
TU17891 other upstream 1376802 5711885 ~ 5714951 (+) True G15995
TU17699 other upstream 1801797 5289881 ~ 5289956 (+) True G15838
TU17650 other upstream 2027049 5061218 ~ 5064704 (+) False G15794
TU17651 other upstream 2027824 5061218 ~ 5063929 (+) True G15794
TU16602 other upstream 3470302 3616248 ~ 3616411 (+) True G14846
TU19033 other downstream 408579 7532572 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19037 other downstream 408647 7532640 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19034 other downstream 408771 7532764 ~ 7540460 (+) True CI01000001_07531945_07539781
TU19348 other downstream 908131 8032124 ~ 8032483 (+) True G17234
TU19478 other downstream 2092029 9216022 ~ 9228859 (+) True G17353

Expression Profile