RNA id: TU19025


Basic Information

Item Value
RNA id TU19025
length 576
lncRNA type antisense_over
GC content 0.50
exon number 2
gene id G16961
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 7461128 ~ 7492111 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTGCATCTGAAATCCCATAGCCTCTCTGAGTAGGCTAGGTACTTCTTTGAATAAGTACTTCCTTCATGACCATTAAAAAAAGAATAAAAAAAAAGGATGGAGTAAAAAACAATTATAAAAGGAAAAGGCCTTGACAAACAGCTGAAGTTTCACTAAGCCATGATTAGAGTGGAGAAGGGTTCTTGTTTTCATATCTGCCACAGAATTCCAGCGAAAGCTTTCAGGTGGATTTCCAGTCTGAGCGAAGCAAGAGACGATGCCACACTTGATCCTGAAGGCATCAAGCATGAGACACCCTTGGTCTGATTTGTAAAAAATATTGTTGGTACCATACCCAGTGACCGAGAATGGCACCGAAACCAAAACAAAGATGTAATGAAACAGGCTTGCCAGACAAAAGATTAATCCCAGAGAGAAACCGAGGCGGATGCTATGCCTTGAATTGTAAAAGGCACTACTATCATCATTGGTAGAGCAAGTAGTTCTTAAGGGAGGCAGGTAAGGGCAGTCCATGGATTTCACTCAGTCGTTCTCTCCCCAGCGCGACCCGTACCGAGCGCCTACAGAGGTCCATT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19055 lncRNA upstream 31061 7429190 ~ 7430067 (+) True G16978
TU19145 lncRNA upstream 137513 7323286 ~ 7323615 (+) True G17061
TU19141 lncRNA upstream 142098 7316664 ~ 7319030 (+) True G17057
TU19046 lncRNA upstream 176224 7279243 ~ 7284904 (+) True G16970
TU19101 lncRNA upstream 308703 7152094 ~ 7152425 (+) True G17019
TU19074 lncRNA downstream 13834 7505945 ~ 7506881 (+) True G16997
TU19205 lncRNA downstream 83401 7575512 ~ 7575845 (+) True G17116
TU19195 lncRNA downstream 105870 7597981 ~ 7696043 (+) True G17106
TU19227 lncRNA downstream 300093 7792204 ~ 7792612 (+) True G17137
TU19191 lncRNA downstream 382098 7874209 ~ 7906024 (+) True G17103
CI01000001_07421548_07447343.mRNA mRNA upstream 13623 7421548 ~ 7447505 (+) False CI01000001_07421548_07447343
CI01000001_07405859_07406484.mRNA mRNA upstream 54439 7405144 ~ 7406689 (+) True CI01000001_07405859_07406484
CI01000001_07330166_07335508.mRNA mRNA upstream 125092 7330166 ~ 7336036 (+) True CI01000001_07330166_07335508
CI01000001_07231558_07266828.mRNA mRNA upstream 194226 7231558 ~ 7266902 (+) True CI01000001_07231558_07266828
CI01000001_07208833_07215412.mRNA mRNA upstream 245621 7208283 ~ 7215507 (+) True CI01000001_07208833_07215412
CI01000001_07527533_07530601.mRNA mRNA downstream 34918 7527029 ~ 7531071 (+) True CI01000001_07527533_07530601
CI01000001_07531945_07539781.mRNA mRNA downstream 39430 7531541 ~ 7540565 (+) False CI01000001_07531945_07539781
CI01000001_07544981_07548224.mRNA mRNA downstream 52799 7544910 ~ 7548706 (+) True CI01000001_07544981_07548224
CI01000001_07558102_07564471.mRNA mRNA downstream 64814 7556925 ~ 7564666 (+) True CI01000001_07558102_07564471
CI01000001_07577777_07584809.mRNA mRNA downstream 85614 7577725 ~ 7584809 (+) True CI01000001_07577777_07584809
TU17891 other upstream 1746177 5711885 ~ 5714951 (+) True G15995
TU17699 other upstream 2171172 5289881 ~ 5289956 (+) True G15838
TU17650 other upstream 2396424 5061218 ~ 5064704 (+) False G15794
TU17651 other upstream 2397199 5061218 ~ 5063929 (+) True G15794
TU16602 other upstream 3839677 3616248 ~ 3616411 (+) True G14846
TU19033 other downstream 40461 7532572 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19037 other downstream 40529 7532640 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19034 other downstream 40653 7532764 ~ 7540460 (+) True CI01000001_07531945_07539781
TU19348 other downstream 540013 8032124 ~ 8032483 (+) True G17234
TU19478 other downstream 1723911 9216022 ~ 9228859 (+) True G17353

Expression Profile