RNA id: TU20273


Basic Information

Item Value
RNA id TU20273
length 915
RNA type TUCP
GC content 0.57
exon number 2
gene id G18023
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 7756501 ~ 7757520 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGGTCCTGTTGGTGCAGGTGTAGGTGTGAATGGATGTGCGAGTGCTGATGGTGGTGTGGCGTCACGTTGAACATCTGCAGCCGTGCAATGGGGTCGTTTGCTACAGAAGCCATCCTCTCAACATGTAGCCTCTCAGGGTAGGACATCTCAGGCCGTAACTGTGGCCCAGCCAGTGCCAGCCGTTCCCGCTCCAGTGGATTCAGGCCCGGGTGGAAGGAGGCAAATGGATGAGGGCCAGCCATGGGTGGGAGACCAATAGGCCCGTGCCGTGCAAAGTGCTCCATGGGGTTGGCGGAAGGATGCAGACTGTCCAGTTCTGGAGGTTTGACCTCAAAGCCTGGCTTCATCCTCTCCATTCTAAGCTCCCTCTCTCGGATCTCTCTCTCCCGTATCTCTCGCTCCCGCAGCTCACGCTCACGCATGCCGGGGTCTGCGTTGTACAGACCAGGCATGTGGTAGGCCAGGAGTGGGTCTGTGGGGTTGAGTGAGACGAAGAAGGGATGGTTGCGGTTGGTGGGGGACATGACGTGGGGTCGAGCGTATTCGCTGAGCGTGCGCAGGGCGGGTGTGTCAGGGCCGATGTAAGGGGGCACAGTGGCGATGGTGGTGGGTGGTGGATCAAAAGAGGTCCGCATATGAGCCGATCCCGCCATTGGGGGTTCACCCATGCGACCCTCATGAGAAGAACTGGAAGCTTTAGCAGCTCTCTCAGCCTCTTTCTCTCTCTCCCGTTCCCGTTCTCTTTCTTTTTCTCGTTCCCTCTCCTTTTCTTTTTCCTCTCGTGCTTTCTGCTCTGCTTCCCTCTTGGCTTTCTCCAGCGCCTCCTCCCGCTTTTTTGCCAGTTTCGATGAGGCCAGTGGTGTGAAGTAGAAGTCTGTTCTGGCACATGTGTTGTAACCTCTGTCCAGATGCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20395 lncRNA downstream 19017 7728123 ~ 7737484 (-) False G18141
TU20396 lncRNA downstream 19017 7736358 ~ 7737484 (-) True G18141
TU20188 lncRNA downstream 168028 7586506 ~ 7588473 (-) True G17950
TU20189 lncRNA downstream 170403 7584537 ~ 7586098 (-) True G17951
TU20264 lncRNA downstream 181366 7574901 ~ 7575135 (-) True G18017
TU20425 lncRNA upstream 38566 7796086 ~ 7796344 (-) True CI01000001_07769921_07796135
TU20427 lncRNA upstream 41510 7799030 ~ 7799626 (-) True G18171
TU20445 lncRNA upstream 48734 7806254 ~ 7806702 (-) True CI01000001_07807093_07808245
TU20484 lncRNA upstream 149005 7906525 ~ 7906850 (-) True G18222
TU20504 lncRNA upstream 177634 7935154 ~ 7935374 (-) True G18239
CI01000001_07609855_07631058.mRNA mRNA downstream 125216 7609820 ~ 7631285 (-) True CI01000001_07609855_07631058
CI01000001_07568083_07573146.mRNA mRNA downstream 183162 7568083 ~ 7573339 (-) True CI01000001_07568083_07573146
CI01000001_07565885_07567962.mRNA mRNA downstream 188539 7565370 ~ 7567962 (-) True CI01000001_07565885_07567962
CI01000001_07492000_07496973.mRNA mRNA downstream 259528 7491422 ~ 7496973 (-) True CI01000001_07492000_07496973
CI01000001_07399727_07402300.mRNA mRNA downstream 352819 7399645 ~ 7403682 (-) True CI01000001_07399727_07402300
CI01000001_07769921_07796135.mRNA mRNA upstream 11569 7769089 ~ 7796547 (-) False CI01000001_07769921_07796135
CI01000001_07807093_07808245.mRNA mRNA upstream 48393 7805913 ~ 7808493 (-) False CI01000001_07807093_07808245
CI01000001_07875805_07905655.mRNA mRNA upstream 118218 7875738 ~ 7905655 (-) True CI01000001_07875805_07905655
CI01000001_07953501_07958007.mRNA mRNA upstream 195713 7953233 ~ 7958007 (-) True CI01000001_07953501_07958007
CI01000001_08036532_08037745.mRNA mRNA upstream 278706 8036226 ~ 8038004 (-) True CI01000001_08036532_08037745
TU20141 other downstream 503247 7251311 ~ 7253254 (-) False G17911
TU19985 other downstream 819278 6936077 ~ 6937223 (-) True CI01000001_06932075_06937182
TU19958 other downstream 866087 6837525 ~ 6890414 (-) False G17789
TU18776 other downstream 1140912 6584480 ~ 6615589 (-) False G16753
TU18669 other downstream 1408546 6344104 ~ 6347955 (-) True G16664
TU20485 other upstream 168584 7926104 ~ 7928517 (-) True G18223
TU21059 other upstream 2052137 9810938 ~ 9820896 (-) True G18754
TU22623 other upstream 2781507 10539027 ~ 10539850 (-) True G20136
TU22735 other upstream 3104705 10863945 ~ 10863998 (-) True G20234
TU22729 other upstream 3264607 11022127 ~ 11028777 (-) False G20230

Expression Profile