RNA id: TU19478



Basic Information


Item Value
RNA id TU19478
length 2595
RNA type TUCP
GC content 0.51
exon number 16
gene id G17353
representative True

Chromosome Information


Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 9216022 ~ 9228859 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGTGGATTTGCAGCTGGTGGGGTCATCAGGACGCGTCTCAAAGCCATCGACACAGAGGCAGTGGAAGCTGCCGTGTGTGTTGATGCAACGCTGAGCACAGGGATATGTGGTGGTGCACTCATCCACATCCACACACGTCTTTCCATCTTGCTTCAGACGGAAACCTGGATGACACCGGCACTTAAAGCCGATCTTGAGATCTTCACAGAGCTGTGAGCAGCCGCTCAGCTTACTGTTGAGACATTCATTGATGAAGCAGTTGTGTTCATCAGAGCCGTCACCACACTCATCGTTACCATCACACAGCAATGTCTCGTTCACACACTTGCCATTGGCACACAGGAAGGAAGTGTCATTACAGCGCCTCTCTGGGTCTGTGCAAAGTGGGTTTTTGGGAGCTTCGTCTGATTGGTCCCTACAGTCAAACTCTCCGTCACACTCCCAGCTCTTCTGCTTCAAACACTGGCCATTAGCACAGCGGAAATCGTTCGGCCCACACGTGGGATATTCACACTCGGGCGACTCGTCAGAGCCATCGCGGCAGTCAACGTCATGATCACACATGAAGTTTTTGGGAATACACTGATAATTCTGACATTGGAATTCAGAGTCATCACAGGTCTTATTGAACGCACAGCCCGCCTTGATGCCCTCATCTGCACCATCAGGACAGTCCTTATCCCCGTCACACTTCCAACGCTGAGAAATACACATGTGGGAGCCGGGACATTGGAATGCTTCTGGACTGCAAGTCTTTGTCTTGCATTTGCTGTCCTCATCAGTGCCGTCTCCACAGTCATCAGTGCCGTCACACACCCAGGATTTGGAGATACAACGATGGTTTCCACACTCAAACTGATTTGATGCACAGAACTTATCACAGTGAGACTCATCTGCTCCATTCTCACAGTCATTCTCTTTGTCACAGGTCCAGCTCATGGGAATACAACGGCCGCTCGGACACGCAAAGAAGTTCACTGTACATTTCTGCTTCCTTTTCTCCGGACAGTTTCTTTCATCTGAGAAGTCTCCGCAGTCATTGGAGCCATCACAGCGCCAGGAGGGGGCGTAGCAGAGTGTAGTGAACTCACACCTCTCGAAGGTCATGCCCTTCACTCCAAGCAGATAGTAACTAGAGCAGTCAGTGGGGCTGCAGTTCATCTCATCACTGGCGTCCTCACAGTCCGCCACCTGATTACAGCGACTAGAGTTAGTGATGCAGGAACCGTCTTTGCACTGGAACTCAGCAGCGCTGCACAGAGTCATGTTGCACGGCAGCTCGTCTGAACCATCTCCACAGTCATCAGTGCCGTCGCACCAGGAGCTGTGTTTGATACAGCGTCCGTTAATGCAGCGCCGGTAGCCCTTCTTACACATGCGGTTCACACAGTAGGACTGCTTCTCATCAGACTTGTCTTTGCAGTGGGCCTGACTGTCACAGGTAAAGCTGTAGTCGATACAGTCACCGTTTCCACACTCAAACTCATCCACGCTGTTACAGGTTGTGTTCTCCGCAACACAAGTGTTGTCTCCCAGTAGTTTGCGCTCTCCACGGCAGCTACAGTTGACTCGTCCCTCTGACGTGAGCAGACACAGGTCCTGACAGCCTCCGTTATTGGTGAGGCATGGAGAAAACTCACAGCTATTGGTGTCTTTGGCCACAGCGATGATGCCCATTGGCTGTTGAGGAATGTCAGCACGTAGGACTTTCATATCTCTGCCGTATTTATCAGCTCTGAGAACAGCTCTGCGCACCCAGTCTGTCCAGAAGATATATTCACCATACACAGCCAAACCGAAAGGATGCACTGGCTCGTTCTTTAGGACCACAAAGCGCCGGCTGCCATCATACTCGCAGCGCTCAATCTTGTCAAATGTGGCGTCAGAGAAATAGAGTTTCTCAGCACGGTGGTCGATGGCCAGTCCGTTCGGGGTGCGGATGTTATTTCCGATGATAACAAGGACGTTAGCTCCAGAAAGAGATGCTCGCATGATACTGGGAGACTGTTCATTCCAGTTAGTCCAGAACATCAGGTCTTGACATTCATCCAGAACAAAGGCTCTGGGGTGGTCGTCCCCGGACATAGTGACCACGGTGTCTCTATCAAAAGCTCCAGTGCGACTCTGGTCCACAGTGTGCCGTGTAATGGTGGAGGTGGTATAGCTGGTCCAGTAAAGTGTGTCCCAACCACGGTGATAAGCCAAACCTTCAACTGACCCTACATTCTCTACTATGGTCTTGCGGTCAGAGCCGTCATCGCTGATCTGCTGAATGTTACCGAAGTGGATGTCGCTGTAGAAGATCCGGTTGGCTCCCTTTCCACCACCGCCTCTGTAGTCGAAGGTAAGGGCGATTACGTTCTTCATGTGCTCTGGGTCTTCGAAGGGTTTAATGGGAGCATTGAGGTTTGTTTCATCCGACAGGTGGATGCTCTTCAGTATCGTGCGCTCCGAGTAGAGGAGGTAGCCATCATAGTCCCTGCAACTGTGGCCATCTTCTGCCAGCATGCCGTGTGCGCAGGCACAGGTACGATTGCCATTACCACGGAACAGACACAGCTGTTCACAACCACCATTGTTCACCTTACAGACGT

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU19443 lncRNA upstream 70467 9144411 ~ 9145555 (+) True CI01000001_09132867_09145278
TU19635 lncRNA upstream 72188 9143361 ~ 9143834 (+) True G17507
TU19513 lncRNA upstream 124637 9088542 ~ 9091385 (+) True G17388
TU19510 lncRNA upstream 187071 9028681 ~ 9028951 (+) True G17385
TU19484 lncRNA upstream 187503 9028111 ~ 9028519 (+) True G17359
TU19474 lncRNA downstream 35657 9264516 ~ 9291390 (+) True G17349
TU19694 lncRNA downstream 152276 9381135 ~ 9381660 (+) True G17566
TU19514 lncRNA downstream 155040 9383899 ~ 9384640 (+) True CI01000001_09383903_09384322
TU19709 lncRNA downstream 244752 9473611 ~ 9473929 (+) True G17581
TU19711 lncRNA downstream 245721 9474580 ~ 9474783 (+) True G17583
CI01000001_09186450_09203866.mRNA mRNA upstream 12156 9186333 ~ 9203866 (+) True CI01000001_09186450_09203866
CI01000001_09164619_09166621.mRNA mRNA upstream 49297 9164541 ~ 9166725 (+) True CI01000001_09164619_09166621
CI01000001_09147684_09162673.mRNA mRNA upstream 52807 9147684 ~ 9163215 (+) True CI01000001_09147684_09162673
CI01000001_09132867_09145278.mRNA mRNA upstream 70503 9132867 ~ 9145519 (+) False CI01000001_09132867_09145278
CI01000001_09113045_09130978.mRNA mRNA upstream 84700 9113045 ~ 9131322 (+) True CI01000001_09113045_09130978
CI01000001_09267532_09267951.mRNA mRNA downstream 38603 9267462 ~ 9268132 (+) True CI01000001_09267532_09267951
CI01000001_09285920_09289361.mRNA mRNA downstream 56929 9285788 ~ 9289441 (+) True CI01000001_09285920_09289361
CI01000001_09308544_09311741.mRNA mRNA downstream 77842 9306701 ~ 9312011 (+) False CI01000001_09308544_09311741
CI01000001_09334528_09350703.mRNA mRNA downstream 105669 9334528 ~ 9351363 (+) True CI01000001_09334528_09350703
CI01000001_09383903_09384322.mRNA mRNA downstream 155044 9383903 ~ 9384678 (+) False CI01000001_09383903_09384322
TU19348 other upstream 1183539 8032124 ~ 8032483 (+) True G17234
TU19033 other upstream 1675436 7532572 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19037 other upstream 1675436 7532640 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19034 other upstream 1675562 7532764 ~ 7540460 (+) True CI01000001_07531945_07539781
TU17891 other upstream 3501071 5711885 ~ 5714951 (+) True G15995
TU19479 other downstream 5604 9234463 ~ 9240677 (+) True G17354
TU19459 other downstream 189469 9418328 ~ 9438063 (+) True G17334
TU21219 other downstream 1011041 10239900 ~ 10241492 (+) True G18896
TU21190 other downstream 1028253 10257112 ~ 10260714 (+) True G18873
TU21188 other downstream 1042287 10271146 ~ 10281369 (+) True G18872

Expression Profile