RNA id: TU21156


Basic Information

Item Value
RNA id TU21156
length 299
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G18840
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10120312 ~ 10120610 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCACACAAAGGCTGCGGCAGTGCGGTCTGATGTGCAGAATGTGACTGTGTTGAATGCATTGAGTGGGGCAGCAGGAGCAAAGACACCAGTCAGGTTAACTGTCATTGTTCTCATTACCTCCAAGTGAAAGAAAAAGAACGAAATATAGCTGAGCACTCAAGTGATGACCAACCGTGTTCTGCAAGTAAATCTGGCAAACAACAAGAAGGGGGGTAAACCGCTGTGTACTGAACACGGCCAGGATGATTCATCCCTGTCAAACCCAGACAACTCACCCAAAATGCACAAATACGCTTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21155 lncRNA upstream 1056 10119051 ~ 10119256 (+) True G18839
TU21129 lncRNA upstream 31802 10087959 ~ 10088510 (+) True G18816
TU21134 lncRNA upstream 54628 10034276 ~ 10065684 (+) True G18821
TU21132 lncRNA upstream 87305 10032772 ~ 10033007 (+) True G18819
TU21131 lncRNA upstream 88587 10031518 ~ 10031725 (+) True G18818
TU21166 lncRNA downstream 11518 10132128 ~ 10132344 (+) True G18850
TU21167 lncRNA downstream 11940 10132550 ~ 10132753 (+) True G18851
TU21128 lncRNA downstream 38537 10159147 ~ 10164994 (+) True G18815
TU21126 lncRNA downstream 50341 10170951 ~ 10180836 (+) True G18813
TU21180 lncRNA downstream 81891 10202501 ~ 10209817 (+) True G18864
CI01000001_10093069_10104108.mRNA mRNA upstream 14613 10092902 ~ 10105699 (+) True CI01000001_10093069_10104108
CI01000001_10072627_10081119.mRNA mRNA upstream 39133 10072627 ~ 10081179 (+) True CI01000001_10072627_10081119
CI01000001_09946111_09958162.mRNA mRNA upstream 162066 9944120 ~ 9958246 (+) True CI01000001_09946111_09958162
CI01000001_09932205_09934551.mRNA mRNA upstream 185140 9931155 ~ 9935172 (+) True CI01000001_09932205_09934551
CI01000001_09782626_09784851.mRNA mRNA upstream 335128 9782626 ~ 9785184 (+) True CI01000001_09782626_09784851
CI01000001_10141190_10146911.mRNA mRNA downstream 20580 10141190 ~ 10148058 (+) True CI01000001_10141190_10146911
CI01000001_10150798_10152858.mRNA mRNA downstream 29763 10150373 ~ 10152938 (+) True CI01000001_10150798_10152858
CI01000001_10321783_10325266.mRNA mRNA downstream 201037 10321647 ~ 10325305 (+) True CI01000001_10321783_10325266
CI01000001_10328133_10329110.mRNA mRNA downstream 207430 10328040 ~ 10329110 (+) True CI01000001_10328133_10329110
CI01000001_10395420_10396473.mRNA mRNA downstream 274241 10394851 ~ 10396473 (+) False CI01000001_10395420_10396473
TU19459 other upstream 682249 9418328 ~ 9438063 (+) True G17334
TU19479 other upstream 879635 9234463 ~ 9240677 (+) True G17354
TU19478 other upstream 891453 9216022 ~ 9228859 (+) True G17353
TU19348 other upstream 2087829 8032124 ~ 8032483 (+) True G17234
TU19034 other upstream 2579852 7532764 ~ 7540460 (+) True CI01000001_07531945_07539781
TU21219 other downstream 119290 10239900 ~ 10241492 (+) True G18896
TU21190 other downstream 136502 10257112 ~ 10260714 (+) True G18873
TU21188 other downstream 150536 10271146 ~ 10281369 (+) True G18872
TU21193 other downstream 272947 10393557 ~ 10395953 (+) True G18875
TU21268 other downstream 354374 10474984 ~ 10476389 (+) True G18937

Expression Profile