RNA id: TU21128



Basic Information


Item Value
RNA id TU21128
length 882
lncRNA type antisense_over
GC content 0.35
exon number 5
gene id G18815
representative True

Chromosome Information


Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10159147 ~ 10164994 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTTGAATTGCGCCCAGGACACTGGCATATTGCTGAAATCTTCAGAAATGTCTGGCTGGTCAAAGATCTTCTGTGCGAGAAAGTGAAGGTTGTATCTGTCCAAGCCCCGCTGCGTTTGCACCTCAGACATGAACTTACTGCTAAGAGCTTCACACATCTGCTTCCAGGGCACACGGTCCGGAATGACGAACGGTATCCTGTTCTGAAATCAGCACAGCACAGGGCACACGTTGCCTATTTGTTCACAAAACACTGAAGAGGGTCGACAACAGGAAAAAGAGCTGTCGTGTGGTTGTTCTGTGCTACTCACAGGCTCAGAGAAGGCGCAGTCCCATATGATGGTCGCCATAGCATTGATTTCCTGACTACCATGCACAATTACAACCACAGGAAGAGAGATTGTCTGAATGCCGTAAGGGCTCTCACAGCCTGTGATGGTAATTTCTGTGGTGAACAACAAAGCAAACTTTTCCTCCGTCACTGACTCTGAGCCCTTCCTGTCAGCTCGTTTGATCTTCCTTATGGACATGTTTCTAAAGGTAGCACATGTGCTCTTGCTGGAGGTGTTGTGTTCTAAGATGGCCGTGCTGTTGATAAGTTCTCCAACATTTTCATTGGGCACGATGCCTTGACCCAGGTTTCTTGCTTGGGCCTCAGTAATAATCTGCGCTTTCAATACGACGGGTTTTCCAGGAGCCATCTTCTCTCCCAGCAGATGCCGTACAGTGGTGGAAAACTTGGATTGGGTTTTGATGACTTGGGGAGGTTGCTTATCTACTACCAATGAATTCTGTACGAGAGTCTGAAGCAGACATGCCAGGCTTTCCTCCAATGTTTGAAACTGTTCACCCCCTCCGTGGTCCCTCTTCACCAACATGAGCTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU21167 lncRNA upstream 26394 10132550 ~ 10132753 (+) True G18851
TU21166 lncRNA upstream 26803 10132128 ~ 10132344 (+) True G18850
TU21156 lncRNA upstream 38537 10120312 ~ 10120610 (+) True G18840
TU21155 lncRNA upstream 39891 10119051 ~ 10119256 (+) True G18839
TU21129 lncRNA upstream 70637 10087959 ~ 10088510 (+) True G18816
TU21126 lncRNA downstream 5957 10170951 ~ 10180836 (+) True G18813
TU21180 lncRNA downstream 37507 10202501 ~ 10209817 (+) True G18864
TU21186 lncRNA downstream 46235 10211229 ~ 10211446 (+) True G18870
TU21191 lncRNA downstream 58885 10223879 ~ 10260714 (+) False G18873
TU21212 lncRNA downstream 59932 10224926 ~ 10225528 (+) True G18890
CI01000001_10150798_10152858.mRNA mRNA upstream 6209 10150373 ~ 10152938 (+) True CI01000001_10150798_10152858
CI01000001_10141190_10146911.mRNA mRNA upstream 11089 10141190 ~ 10148058 (+) True CI01000001_10141190_10146911
CI01000001_10093069_10104108.mRNA mRNA upstream 53448 10092902 ~ 10105699 (+) True CI01000001_10093069_10104108
CI01000001_10072627_10081119.mRNA mRNA upstream 77968 10072627 ~ 10081179 (+) True CI01000001_10072627_10081119
CI01000001_09946111_09958162.mRNA mRNA upstream 200901 9944120 ~ 9958246 (+) True CI01000001_09946111_09958162
CI01000001_10321783_10325266.mRNA mRNA downstream 156653 10321647 ~ 10325305 (+) True CI01000001_10321783_10325266
CI01000001_10328133_10329110.mRNA mRNA downstream 163046 10328040 ~ 10329110 (+) True CI01000001_10328133_10329110
CI01000001_10395420_10396473.mRNA mRNA downstream 229857 10394851 ~ 10396473 (+) False CI01000001_10395420_10396473
CI01000001_10420931_10426716.mRNA mRNA downstream 255324 10420318 ~ 10427147 (+) True CI01000001_10420931_10426716
CI01000001_10525795_10530510.mRNA mRNA downstream 358268 10523262 ~ 10530543 (+) True CI01000001_10525795_10530510
TU19459 other upstream 721084 9418328 ~ 9438063 (+) True G17334
TU19479 other upstream 918470 9234463 ~ 9240677 (+) True G17354
TU19478 other upstream 930288 9216022 ~ 9228859 (+) True G17353
TU19348 other upstream 2126664 8032124 ~ 8032483 (+) True G17234
TU19034 other upstream 2618687 7532764 ~ 7540460 (+) True CI01000001_07531945_07539781
TU21219 other downstream 74906 10239900 ~ 10241492 (+) True G18896
TU21190 other downstream 92118 10257112 ~ 10260714 (+) True G18873
TU21188 other downstream 106152 10271146 ~ 10281369 (+) True G18872
TU21193 other downstream 228563 10393557 ~ 10395953 (+) True G18875
TU21268 other downstream 309990 10474984 ~ 10476389 (+) True G18937

Expression Profile